miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30908 5' -57.1 NC_006552.1 + 35090 0.66 0.683177
Target:  5'- cUCGGCGUcGCuGGugccgcuCGGCAUCUugccggucaGGCGGu -3'
miRNA:   3'- -AGCCGCA-CGuCCu------GCUGUAGG---------UCGUC- -5'
30908 5' -57.1 NC_006552.1 + 42864 0.66 0.683177
Target:  5'- cUGGCuGUGCAGuucccgaACGGCGUCgAGCAc -3'
miRNA:   3'- aGCCG-CACGUCc------UGCUGUAGgUCGUc -5'
30908 5' -57.1 NC_006552.1 + 64740 0.66 0.683177
Target:  5'- gCGGCGcUGCAGGugGcgcucaacauCGUCCAacGCGc -3'
miRNA:   3'- aGCCGC-ACGUCCugCu---------GUAGGU--CGUc -5'
30908 5' -57.1 NC_006552.1 + 61206 0.66 0.66177
Target:  5'- aUCGGC-UGCuGGGGCGACAcagCCAaGgGGg -3'
miRNA:   3'- -AGCCGcACG-UCCUGCUGUa--GGU-CgUC- -5'
30908 5' -57.1 NC_006552.1 + 60073 0.66 0.66177
Target:  5'- gCGGCG-GUcGGGCcACucUCCAGCAGc -3'
miRNA:   3'- aGCCGCaCGuCCUGcUGu-AGGUCGUC- -5'
30908 5' -57.1 NC_006552.1 + 21150 0.66 0.640256
Target:  5'- -gGGCG-GCGGcGACGcgauaggcGCAUCCGGCc- -3'
miRNA:   3'- agCCGCaCGUC-CUGC--------UGUAGGUCGuc -5'
30908 5' -57.1 NC_006552.1 + 15001 0.66 0.640256
Target:  5'- gUCGGUGgcgGUAGGcuuCGGCG-CCAGUGGc -3'
miRNA:   3'- -AGCCGCa--CGUCCu--GCUGUaGGUCGUC- -5'
30908 5' -57.1 NC_006552.1 + 28205 0.67 0.597216
Target:  5'- cUCGGCGUucGCcccgaAGGucGCGACcUCCGGCGu -3'
miRNA:   3'- -AGCCGCA--CG-----UCC--UGCUGuAGGUCGUc -5'
30908 5' -57.1 NC_006552.1 + 33544 0.67 0.597216
Target:  5'- -aGGCGcGCAGcGGcCGACAg-CAGCAGg -3'
miRNA:   3'- agCCGCaCGUC-CU-GCUGUagGUCGUC- -5'
30908 5' -57.1 NC_006552.1 + 52949 0.68 0.554625
Target:  5'- cCGGCGcccgccGCcGGuGCGGCAUCCGGguGc -3'
miRNA:   3'- aGCCGCa-----CGuCC-UGCUGUAGGUCguC- -5'
30908 5' -57.1 NC_006552.1 + 56275 0.69 0.502755
Target:  5'- cCGGCGUccGcCAGuuCGcCAUCCAGCAGc -3'
miRNA:   3'- aGCCGCA--C-GUCcuGCuGUAGGUCGUC- -5'
30908 5' -57.1 NC_006552.1 + 35627 0.69 0.453111
Target:  5'- gUCGGCGUcCGGGugGgccucguagaucGCAUUCAGguGg -3'
miRNA:   3'- -AGCCGCAcGUCCugC------------UGUAGGUCguC- -5'
30908 5' -57.1 NC_006552.1 + 28611 0.7 0.406256
Target:  5'- aUCGGCG-GCGGuuCGAUgccuUCCAGCGGc -3'
miRNA:   3'- -AGCCGCaCGUCcuGCUGu---AGGUCGUC- -5'
30908 5' -57.1 NC_006552.1 + 56466 0.72 0.320704
Target:  5'- -gGGCcgcccugucagGCAGGGCGGCGUCCAGUg- -3'
miRNA:   3'- agCCGca---------CGUCCUGCUGUAGGUCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.