miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30909 3' -61 NC_006552.1 + 15480 0.66 0.443921
Target:  5'- cAGCCGGUUGUGcgGCUuGCGCCuGCu -3'
miRNA:   3'- -UUGGCCGACAUagCGAcCGCGGcCGu -5'
30909 3' -61 NC_006552.1 + 32702 0.66 0.425252
Target:  5'- cGCCGGCcGg--CGC-GGgGCCGGUg -3'
miRNA:   3'- uUGGCCGaCauaGCGaCCgCGGCCGu -5'
30909 3' -61 NC_006552.1 + 21175 0.66 0.425252
Target:  5'- -uCCGGCcg---CGUcGGUGCCGGCAc -3'
miRNA:   3'- uuGGCCGacauaGCGaCCGCGGCCGU- -5'
30909 3' -61 NC_006552.1 + 33380 0.66 0.416094
Target:  5'- gGGCCGGCccu-UCGUagGGCGgCGGCGc -3'
miRNA:   3'- -UUGGCCGacauAGCGa-CCGCgGCCGU- -5'
30909 3' -61 NC_006552.1 + 25898 0.66 0.407059
Target:  5'- cGACCGGCgagccauccgGUGaugCGUUGGUGCCuaccaccucGGCAg -3'
miRNA:   3'- -UUGGCCGa---------CAUa--GCGACCGCGG---------CCGU- -5'
30909 3' -61 NC_006552.1 + 13832 0.66 0.398147
Target:  5'- uGCCGGCgcgcaCGUUcaucaGGCGCCGGUAc -3'
miRNA:   3'- uUGGCCGacauaGCGA-----CCGCGGCCGU- -5'
30909 3' -61 NC_006552.1 + 9728 0.67 0.347382
Target:  5'- cGCUGGCgcgauucAUCaGCaUGGCGCCGGCc -3'
miRNA:   3'- uUGGCCGaca----UAG-CG-ACCGCGGCCGu -5'
30909 3' -61 NC_006552.1 + 22050 0.68 0.323792
Target:  5'- cGGCCuGGCcagUGcUGUCGCUGauGCGCgCGGCAu -3'
miRNA:   3'- -UUGG-CCG---AC-AUAGCGAC--CGCG-GCCGU- -5'
30909 3' -61 NC_006552.1 + 36155 0.68 0.299967
Target:  5'- uGAUCGGCggcaucggCGCUGGCcucgccagcaucGCCGGCAc -3'
miRNA:   3'- -UUGGCCGacaua---GCGACCG------------CGGCCGU- -5'
30909 3' -61 NC_006552.1 + 24256 0.69 0.287172
Target:  5'- cAUCGGUUGUgGUCGCcGGCacuaCCGGCAg -3'
miRNA:   3'- uUGGCCGACA-UAGCGaCCGc---GGCCGU- -5'
30909 3' -61 NC_006552.1 + 35069 0.69 0.266809
Target:  5'- cGACUGGCccuugGUcuucuucucggcGUCGCUGGUGCCgcucGGCAu -3'
miRNA:   3'- -UUGGCCGa----CA------------UAGCGACCGCGG----CCGU- -5'
30909 3' -61 NC_006552.1 + 44431 0.69 0.260932
Target:  5'- aAACCGGCucgaguacgugcUGUucgagcagcaacugCGCUgccGGCGCCGGCAg -3'
miRNA:   3'- -UUGGCCG------------ACAua------------GCGA---CCGCGGCCGU- -5'
30909 3' -61 NC_006552.1 + 12621 0.7 0.241495
Target:  5'- cGCCGGCcGUAgucUGCccGGCGCUGGCu -3'
miRNA:   3'- uUGGCCGaCAUa--GCGa-CCGCGGCCGu -5'
30909 3' -61 NC_006552.1 + 3577 0.72 0.182093
Target:  5'- uGCUGGCcGagcCGCcGGCGCCGGCAg -3'
miRNA:   3'- uUGGCCGaCauaGCGaCCGCGGCCGU- -5'
30909 3' -61 NC_006552.1 + 63242 0.72 0.177387
Target:  5'- cGCCGGCUGUgccuAUCGCcucGGCaccCCGGCGa -3'
miRNA:   3'- uUGGCCGACA----UAGCGa--CCGc--GGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.