miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30911 3' -55.9 NC_006552.1 + 2055 0.7 0.448713
Target:  5'- cGCUUGagCGcGCCGgcgucgugcGCGGCCUGCUGa -3'
miRNA:   3'- aUGGACaaGC-CGGU---------UGUCGGACGACg -5'
30911 3' -55.9 NC_006552.1 + 9574 0.66 0.705801
Target:  5'- cGgCUG-UCGGCgAACugauGGCCcugGCUGCg -3'
miRNA:   3'- aUgGACaAGCCGgUUG----UCGGa--CGACG- -5'
30911 3' -55.9 NC_006552.1 + 12821 0.66 0.673127
Target:  5'- -gUCUGcgggUUGG-CGACAGCCUucuGCUGCg -3'
miRNA:   3'- auGGACa---AGCCgGUUGUCGGA---CGACG- -5'
30911 3' -55.9 NC_006552.1 + 12961 0.73 0.301383
Target:  5'- gGCCUGgcggugcguucgaGGCCAGCAGCCgacaucacguaGCUGCu -3'
miRNA:   3'- aUGGACaag----------CCGGUUGUCGGa----------CGACG- -5'
30911 3' -55.9 NC_006552.1 + 13319 0.69 0.499367
Target:  5'- cUGCCgGUUCGGacuGgGGCCggGCUGCa -3'
miRNA:   3'- -AUGGaCAAGCCgguUgUCGGa-CGACG- -5'
30911 3' -55.9 NC_006552.1 + 13623 0.66 0.662143
Target:  5'- cGCCUugUCGGCaCG--GGCCUGCUcgGCg -3'
miRNA:   3'- aUGGAcaAGCCG-GUugUCGGACGA--CG- -5'
30911 3' -55.9 NC_006552.1 + 15481 0.73 0.300632
Target:  5'- aGCCgGUugugCGGCUuGC-GCCUGCUGCg -3'
miRNA:   3'- aUGGaCAa---GCCGGuUGuCGGACGACG- -5'
30911 3' -55.9 NC_006552.1 + 15968 0.75 0.211618
Target:  5'- uUGCCUccUCGGCagccugcuggagcGCGGCCUGCUGCa -3'
miRNA:   3'- -AUGGAcaAGCCGgu-----------UGUCGGACGACG- -5'
30911 3' -55.9 NC_006552.1 + 18755 0.67 0.607009
Target:  5'- gGCCUGUgcaaUGGCCuguuGCuGCCgUGCcGCg -3'
miRNA:   3'- aUGGACAa---GCCGGu---UGuCGG-ACGaCG- -5'
30911 3' -55.9 NC_006552.1 + 18873 0.66 0.684072
Target:  5'- gUGCgCUGa-CGGUgcaCAGCgagAGCCUGCUGCu -3'
miRNA:   3'- -AUG-GACaaGCCG---GUUG---UCGGACGACG- -5'
30911 3' -55.9 NC_006552.1 + 20403 0.68 0.569752
Target:  5'- cGCCaUGUucuggugcauguucUCGGUCAACugcucgagggccaGGcCCUGCUGCa -3'
miRNA:   3'- aUGG-ACA--------------AGCCGGUUG-------------UC-GGACGACG- -5'
30911 3' -55.9 NC_006552.1 + 20680 0.67 0.640102
Target:  5'- cGCCUGcUCGaugggcGCCGGCAGuCCUGUgccGCc -3'
miRNA:   3'- aUGGACaAGC------CGGUUGUC-GGACGa--CG- -5'
30911 3' -55.9 NC_006552.1 + 32120 0.67 0.640102
Target:  5'- -cCCUGgaUGGCguaCAGCGGCUUGCcggUGCa -3'
miRNA:   3'- auGGACaaGCCG---GUUGUCGGACG---ACG- -5'
30911 3' -55.9 NC_006552.1 + 35151 0.66 0.68298
Target:  5'- -cCCUGgcagagCGcgaacaaGCCGGCGGCCUGUUGg -3'
miRNA:   3'- auGGACaa----GC-------CGGUUGUCGGACGACg -5'
30911 3' -55.9 NC_006552.1 + 35393 0.67 0.603707
Target:  5'- gGCCggcgGUUCGGUCuuggcuuuguugauGGCAGCCUGg-GCc -3'
miRNA:   3'- aUGGa---CAAGCCGG--------------UUGUCGGACgaCG- -5'
30911 3' -55.9 NC_006552.1 + 35769 0.66 0.684072
Target:  5'- aUACCUG--CGGCCAGCGcuuCCUcGCUGa -3'
miRNA:   3'- -AUGGACaaGCCGGUUGUc--GGA-CGACg -5'
30911 3' -55.9 NC_006552.1 + 35928 0.67 0.585041
Target:  5'- uUGCCUGcgCGGCCuggGCuugGGCCuuccagUGCUGUu -3'
miRNA:   3'- -AUGGACaaGCCGGu--UG---UCGG------ACGACG- -5'
30911 3' -55.9 NC_006552.1 + 37841 0.66 0.673127
Target:  5'- gGCCUGcaUGGCacugaauGCGGCCUGCaccccgaucUGCa -3'
miRNA:   3'- aUGGACaaGCCGgu-----UGUCGGACG---------ACG- -5'
30911 3' -55.9 NC_006552.1 + 44556 0.75 0.226681
Target:  5'- cACCUGa-CGGgCAGC-GCCUGCUGCc -3'
miRNA:   3'- aUGGACaaGCCgGUUGuCGGACGACG- -5'
30911 3' -55.9 NC_006552.1 + 44818 0.71 0.391887
Target:  5'- cGCCcuccCGGCgAACGGCCUGCaaUGCg -3'
miRNA:   3'- aUGGacaaGCCGgUUGUCGGACG--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.