miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30911 5' -58.3 NC_006552.1 + 60035 0.66 0.595288
Target:  5'- cUGCUGgcGUgACgugguugGGGCUgcgcuCGAGGCCu -3'
miRNA:   3'- cACGACuuCGgUGa------CCCGG-----GCUUCGG- -5'
30911 5' -58.3 NC_006552.1 + 18949 0.66 0.595288
Target:  5'- -aGCUGuAGCCGCUGuGaCCUGcugcGGCCg -3'
miRNA:   3'- caCGACuUCGGUGAC-CcGGGCu---UCGG- -5'
30911 5' -58.3 NC_006552.1 + 3575 0.66 0.584576
Target:  5'- gGUGCUGGccgAGCCGCcGGcGCCgGcaggacuuGCCg -3'
miRNA:   3'- -CACGACU---UCGGUGaCC-CGGgCuu------CGG- -5'
30911 5' -58.3 NC_006552.1 + 38452 0.66 0.573902
Target:  5'- cUGCUGuuccuggauGCCGCUGGuGgCCGu-GCCu -3'
miRNA:   3'- cACGACuu-------CGGUGACC-CgGGCuuCGG- -5'
30911 5' -58.3 NC_006552.1 + 42358 0.66 0.573902
Target:  5'- gGUGCUG-GGCUuCUGGGucaugaCCCGGaauuguccgGGCCa -3'
miRNA:   3'- -CACGACuUCGGuGACCC------GGGCU---------UCGG- -5'
30911 5' -58.3 NC_006552.1 + 41845 0.66 0.563274
Target:  5'- gGUGCggcucGgCAUUGGGgUCGAAGCCu -3'
miRNA:   3'- -CACGacuu-CgGUGACCCgGGCUUCGG- -5'
30911 5' -58.3 NC_006552.1 + 32644 0.66 0.5527
Target:  5'- uUGC-GAGcgcGCUccuGCUGGGCCUGcuGAGCCu -3'
miRNA:   3'- cACGaCUU---CGG---UGACCCGGGC--UUCGG- -5'
30911 5' -58.3 NC_006552.1 + 63482 0.66 0.542185
Target:  5'- -cGCUGccGGCCGCc-GGCgCCGGAGCa -3'
miRNA:   3'- caCGACu-UCGGUGacCCG-GGCUUCGg -5'
30911 5' -58.3 NC_006552.1 + 34422 0.67 0.531738
Target:  5'- cUGCUuggcGAAGCUguuguACUGGGCCgGcGAGCa -3'
miRNA:   3'- cACGA----CUUCGG-----UGACCCGGgC-UUCGg -5'
30911 5' -58.3 NC_006552.1 + 60732 0.67 0.520331
Target:  5'- aGUGgUGAAGCCGCa--GCCCGAcuuccucGGCUc -3'
miRNA:   3'- -CACgACUUCGGUGaccCGGGCU-------UCGG- -5'
30911 5' -58.3 NC_006552.1 + 11574 0.67 0.500862
Target:  5'- uUGCU---GCCACUGcgccGGCCCaGGGCCu -3'
miRNA:   3'- cACGAcuuCGGUGAC----CCGGGcUUCGG- -5'
30911 5' -58.3 NC_006552.1 + 31943 0.67 0.497817
Target:  5'- aUGCUGAAGCCgcgauacagcgcccACUGGaCCaGAuGCCg -3'
miRNA:   3'- cACGACUUCGG--------------UGACCcGGgCUuCGG- -5'
30911 5' -58.3 NC_006552.1 + 61625 0.67 0.490744
Target:  5'- -gGCaacuGCCugauCUGGauGCCCGAGGCCg -3'
miRNA:   3'- caCGacuuCGGu---GACC--CGGGCUUCGG- -5'
30911 5' -58.3 NC_006552.1 + 50276 0.68 0.46001
Target:  5'- -cGCaUGAAGCCaaaugcgACUGGcGCCCGccGGGCg -3'
miRNA:   3'- caCG-ACUUCGG-------UGACC-CGGGC--UUCGg -5'
30911 5' -58.3 NC_006552.1 + 16818 0.72 0.244322
Target:  5'- -cGCUGGAGCCA--GcGCCCGAAcGCCa -3'
miRNA:   3'- caCGACUUCGGUgaCcCGGGCUU-CGG- -5'
30911 5' -58.3 NC_006552.1 + 16096 0.72 0.244322
Target:  5'- -cGCuuUGggGCCGCcGGGaCCGGAGUCa -3'
miRNA:   3'- caCG--ACuuCGGUGaCCCgGGCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.