miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30912 3' -51.8 NC_006552.1 + 42529 0.66 0.913449
Target:  5'- ---aUCgCCAGUUCCGCgGCCaguaucugguucGaAUGCCc -3'
miRNA:   3'- uuaaAG-GGUCAAGGUGgUGG------------C-UACGG- -5'
30912 3' -51.8 NC_006552.1 + 62336 0.66 0.899938
Target:  5'- --cUUCCCcgAGUUCCACUugCGcuacugGCUc -3'
miRNA:   3'- uuaAAGGG--UCAAGGUGGugGCua----CGG- -5'
30912 3' -51.8 NC_006552.1 + 1650 0.66 0.899938
Target:  5'- --aUUCCCAuGUccuacUCCGacccCCGCCGccGCCa -3'
miRNA:   3'- uuaAAGGGU-CA-----AGGU----GGUGGCuaCGG- -5'
30912 3' -51.8 NC_006552.1 + 63367 0.66 0.885308
Target:  5'- ----aCCCGGUcCgCACCugCGucgGCCa -3'
miRNA:   3'- uuaaaGGGUCAaG-GUGGugGCua-CGG- -5'
30912 3' -51.8 NC_006552.1 + 17018 0.67 0.835159
Target:  5'- ---cUCCCGGggCCGgaaGCCGAgcaUGCCg -3'
miRNA:   3'- uuaaAGGGUCaaGGUgg-UGGCU---ACGG- -5'
30912 3' -51.8 NC_006552.1 + 11604 0.67 0.835159
Target:  5'- -----aCCAGUU-CGCCGCCGAacucGCCa -3'
miRNA:   3'- uuaaagGGUCAAgGUGGUGGCUa---CGG- -5'
30912 3' -51.8 NC_006552.1 + 57533 0.67 0.835159
Target:  5'- ----aCCaCAGUUCUGCCGCaauUGCCa -3'
miRNA:   3'- uuaaaGG-GUCAAGGUGGUGgcuACGG- -5'
30912 3' -51.8 NC_006552.1 + 63782 0.68 0.82597
Target:  5'- aGGUcgCCgCGGacgCCAUCACCGGUGCg -3'
miRNA:   3'- -UUAaaGG-GUCaa-GGUGGUGGCUACGg -5'
30912 3' -51.8 NC_006552.1 + 20950 0.68 0.82597
Target:  5'- ----gUCCGGgcgUCCGgCACCGGgaugGCCg -3'
miRNA:   3'- uuaaaGGGUCa--AGGUgGUGGCUa---CGG- -5'
30912 3' -51.8 NC_006552.1 + 18243 0.68 0.797168
Target:  5'- ---gUUCCAGUaUUCGCCGCCGAcuCCa -3'
miRNA:   3'- uuaaAGGGUCA-AGGUGGUGGCUacGG- -5'
30912 3' -51.8 NC_006552.1 + 7364 0.69 0.745729
Target:  5'- ----cCCCAGUUCCGCCGCagcgcGCUu -3'
miRNA:   3'- uuaaaGGGUCAAGGUGGUGgcua-CGG- -5'
30912 3' -51.8 NC_006552.1 + 53513 0.69 0.735032
Target:  5'- ----aCCUGGUggaggCuCACCGCgCGAUGCCg -3'
miRNA:   3'- uuaaaGGGUCAa----G-GUGGUG-GCUACGG- -5'
30912 3' -51.8 NC_006552.1 + 52948 0.7 0.713327
Target:  5'- -----gCCGGcgcCCGCCGCCGGUGCg -3'
miRNA:   3'- uuaaagGGUCaa-GGUGGUGGCUACGg -5'
30912 3' -51.8 NC_006552.1 + 55961 0.71 0.669013
Target:  5'- -----aCCAGUUCCGCCGCUucaccgGCCg -3'
miRNA:   3'- uuaaagGGUCAAGGUGGUGGcua---CGG- -5'
30912 3' -51.8 NC_006552.1 + 21629 0.71 0.657815
Target:  5'- cAGUUUCCCGGUcgcgauUCUgccgGCCACCGGcugGCUg -3'
miRNA:   3'- -UUAAAGGGUCA------AGG----UGGUGGCUa--CGG- -5'
30912 3' -51.8 NC_006552.1 + 54013 0.71 0.657815
Target:  5'- ----gCCCuGgccgcgagCCGCCACCGcgGCCg -3'
miRNA:   3'- uuaaaGGGuCaa------GGUGGUGGCuaCGG- -5'
30912 3' -51.8 NC_006552.1 + 20477 0.72 0.568225
Target:  5'- cGAUUUCCCAGguggccgCUugCACCagGAUGUCg -3'
miRNA:   3'- -UUAAAGGGUCaa-----GGugGUGG--CUACGG- -5'
30912 3' -51.8 NC_006552.1 + 63281 0.75 0.43138
Target:  5'- ---cUCgCCGGUcaCCACCuCCGAUGCCa -3'
miRNA:   3'- uuaaAG-GGUCAa-GGUGGuGGCUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.