Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30912 | 3' | -51.8 | NC_006552.1 | + | 63281 | 0.75 | 0.43138 |
Target: 5'- ---cUCgCCGGUcaCCACCuCCGAUGCCa -3' miRNA: 3'- uuaaAG-GGUCAa-GGUGGuGGCUACGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 20477 | 0.72 | 0.568225 |
Target: 5'- cGAUUUCCCAGguggccgCUugCACCagGAUGUCg -3' miRNA: 3'- -UUAAAGGGUCaa-----GGugGUGG--CUACGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 54013 | 0.71 | 0.657815 |
Target: 5'- ----gCCCuGgccgcgagCCGCCACCGcgGCCg -3' miRNA: 3'- uuaaaGGGuCaa------GGUGGUGGCuaCGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 21629 | 0.71 | 0.657815 |
Target: 5'- cAGUUUCCCGGUcgcgauUCUgccgGCCACCGGcugGCUg -3' miRNA: 3'- -UUAAAGGGUCA------AGG----UGGUGGCUa--CGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 55961 | 0.71 | 0.669013 |
Target: 5'- -----aCCAGUUCCGCCGCUucaccgGCCg -3' miRNA: 3'- uuaaagGGUCAAGGUGGUGGcua---CGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 52948 | 0.7 | 0.713327 |
Target: 5'- -----gCCGGcgcCCGCCGCCGGUGCg -3' miRNA: 3'- uuaaagGGUCaa-GGUGGUGGCUACGg -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 53513 | 0.69 | 0.735032 |
Target: 5'- ----aCCUGGUggaggCuCACCGCgCGAUGCCg -3' miRNA: 3'- uuaaaGGGUCAa----G-GUGGUG-GCUACGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 7364 | 0.69 | 0.745729 |
Target: 5'- ----cCCCAGUUCCGCCGCagcgcGCUu -3' miRNA: 3'- uuaaaGGGUCAAGGUGGUGgcua-CGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 18243 | 0.68 | 0.797168 |
Target: 5'- ---gUUCCAGUaUUCGCCGCCGAcuCCa -3' miRNA: 3'- uuaaAGGGUCA-AGGUGGUGGCUacGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 63782 | 0.68 | 0.82597 |
Target: 5'- aGGUcgCCgCGGacgCCAUCACCGGUGCg -3' miRNA: 3'- -UUAaaGG-GUCaa-GGUGGUGGCUACGg -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 20950 | 0.68 | 0.82597 |
Target: 5'- ----gUCCGGgcgUCCGgCACCGGgaugGCCg -3' miRNA: 3'- uuaaaGGGUCa--AGGUgGUGGCUa---CGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 57533 | 0.67 | 0.835159 |
Target: 5'- ----aCCaCAGUUCUGCCGCaauUGCCa -3' miRNA: 3'- uuaaaGG-GUCAAGGUGGUGgcuACGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 11604 | 0.67 | 0.835159 |
Target: 5'- -----aCCAGUU-CGCCGCCGAacucGCCa -3' miRNA: 3'- uuaaagGGUCAAgGUGGUGGCUa---CGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 17018 | 0.67 | 0.835159 |
Target: 5'- ---cUCCCGGggCCGgaaGCCGAgcaUGCCg -3' miRNA: 3'- uuaaAGGGUCaaGGUgg-UGGCU---ACGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 63367 | 0.66 | 0.885308 |
Target: 5'- ----aCCCGGUcCgCACCugCGucgGCCa -3' miRNA: 3'- uuaaaGGGUCAaG-GUGGugGCua-CGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 1650 | 0.66 | 0.899938 |
Target: 5'- --aUUCCCAuGUccuacUCCGacccCCGCCGccGCCa -3' miRNA: 3'- uuaAAGGGU-CA-----AGGU----GGUGGCuaCGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 62336 | 0.66 | 0.899938 |
Target: 5'- --cUUCCCcgAGUUCCACUugCGcuacugGCUc -3' miRNA: 3'- uuaAAGGG--UCAAGGUGGugGCua----CGG- -5' |
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30912 | 3' | -51.8 | NC_006552.1 | + | 42529 | 0.66 | 0.913449 |
Target: 5'- ---aUCgCCAGUUCCGCgGCCaguaucugguucGaAUGCCc -3' miRNA: 3'- uuaaAG-GGUCAAGGUGgUGG------------C-UACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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