Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30913 | 3' | -57.7 | NC_006552.1 | + | 53973 | 0.77 | 0.12155 |
Target: 5'- gGCGGCAagccugAGCAGGCaGGcCAGGCGCGu- -3' miRNA: 3'- -UGUCGU------UCGUCCG-CCuGUCCGCGUug -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 62274 | 0.74 | 0.205937 |
Target: 5'- uGCGGCAucGCAGuacucgcuccgucccGCGGACAccgucGGCGCGACg -3' miRNA: 3'- -UGUCGUu-CGUC---------------CGCCUGU-----CCGCGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 42767 | 0.73 | 0.2148 |
Target: 5'- cCAGCAAGUcguccaccAGGaCGGACAGGCGgucauCGACa -3' miRNA: 3'- uGUCGUUCG--------UCC-GCCUGUCCGC-----GUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 50091 | 0.73 | 0.220503 |
Target: 5'- aACcGCAcGCGGGCGGAac-GCGCAGCa -3' miRNA: 3'- -UGuCGUuCGUCCGCCUgucCGCGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 59403 | 0.73 | 0.232298 |
Target: 5'- cGCGGCAGcGuCAGGCGGugGcGGCGUgAACg -3' miRNA: 3'- -UGUCGUU-C-GUCCGCCugU-CCGCG-UUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 64046 | 0.72 | 0.244619 |
Target: 5'- -gAGCAGGCAGGCGGGgAucGGUGgGAUg -3' miRNA: 3'- ugUCGUUCGUCCGCCUgU--CCGCgUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 61132 | 0.71 | 0.291315 |
Target: 5'- uCAGCGaagAGCAGGCGuuGGCAGagggaguGCGCGGCg -3' miRNA: 3'- uGUCGU---UCGUCCGC--CUGUC-------CGCGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 32178 | 0.69 | 0.386691 |
Target: 5'- cCAGCAccucggccgacuucAGCAccGGCauGGuCGGGCGCGACa -3' miRNA: 3'- uGUCGU--------------UCGU--CCG--CCuGUCCGCGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 30909 | 0.68 | 0.435738 |
Target: 5'- gGCAGCGGuCGGGCGGACAuGGaGCcuGCu -3' miRNA: 3'- -UGUCGUUcGUCCGCCUGU-CCgCGu-UG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 20370 | 0.68 | 0.435738 |
Target: 5'- cGCGuGgAAGCGGGCGaccucgaACAGGCGCuGCg -3' miRNA: 3'- -UGU-CgUUCGUCCGCc------UGUCCGCGuUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 26127 | 0.68 | 0.435738 |
Target: 5'- uGCAGguGGUAGGCcagggccucGGAgAaGCGCAGCa -3' miRNA: 3'- -UGUCguUCGUCCG---------CCUgUcCGCGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 43087 | 0.68 | 0.439584 |
Target: 5'- cACAGCgAAGUcagGGGUguagaagguguuaucGGcCAGGCGCAGCu -3' miRNA: 3'- -UGUCG-UUCG---UCCG---------------CCuGUCCGCGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 30404 | 0.68 | 0.465043 |
Target: 5'- gACAcCAGuCGGGUGGAagauaaucgcCAGGCGCAGCc -3' miRNA: 3'- -UGUcGUUcGUCCGCCU----------GUCCGCGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 18860 | 0.68 | 0.475037 |
Target: 5'- uGCAGCAucAGCAGuGCGcuGACGGuGCaCAGCg -3' miRNA: 3'- -UGUCGU--UCGUC-CGC--CUGUC-CGcGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 41757 | 0.68 | 0.475037 |
Target: 5'- aACAaCGAGCGGGCgccgucGGACAGGuUGCGGg -3' miRNA: 3'- -UGUcGUUCGUCCG------CCUGUCC-GCGUUg -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 56903 | 0.68 | 0.479065 |
Target: 5'- uCGGCGAGgAGugguaccgcgcccgcGCuGGACuGGCGCAACu -3' miRNA: 3'- uGUCGUUCgUC---------------CG-CCUGuCCGCGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 27823 | 0.67 | 0.485138 |
Target: 5'- cGCAGCuucAAGCucacGGCuGGCAGGcCGUAGCc -3' miRNA: 3'- -UGUCG---UUCGu---CCGcCUGUCC-GCGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 44587 | 0.67 | 0.49534 |
Target: 5'- -gAGUGAGCAGGCGcucgUAGGCgGCAAUg -3' miRNA: 3'- ugUCGUUCGUCCGCcu--GUCCG-CGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 15049 | 0.67 | 0.505638 |
Target: 5'- cGCAGCAGGCuguuGGCcGAaCAGGUauuccucgGCAGCc -3' miRNA: 3'- -UGUCGUUCGu---CCGcCU-GUCCG--------CGUUG- -5' |
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30913 | 3' | -57.7 | NC_006552.1 | + | 47556 | 0.67 | 0.516028 |
Target: 5'- cACAGCGAGCcaAGGCcuugccGACAGGCagAACg -3' miRNA: 3'- -UGUCGUUCG--UCCGc-----CUGUCCGcgUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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