miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30913 5' -53.5 NC_006552.1 + 10191 0.66 0.88719
Target:  5'- uCGGCCgauucuucggGCGCgAuaucUCGGCGCAaaCGUGGa -3'
miRNA:   3'- -GCUGG----------CGCGgU----AGCUGUGUaaGCACC- -5'
30913 5' -53.5 NC_006552.1 + 25897 0.66 0.864348
Target:  5'- gCGACCGgcgaGCCAUCcgguGAUGCGUUgGUGc -3'
miRNA:   3'- -GCUGGCg---CGGUAG----CUGUGUAAgCACc -5'
30913 5' -53.5 NC_006552.1 + 14103 0.66 0.864348
Target:  5'- gGGCCGCGCUucauGUCGcGCGCAUcCGg-- -3'
miRNA:   3'- gCUGGCGCGG----UAGC-UGUGUAaGCacc -5'
30913 5' -53.5 NC_006552.1 + 58135 0.67 0.839402
Target:  5'- aGACCGCaGCCGacugcaUCGACugG-UCGUa- -3'
miRNA:   3'- gCUGGCG-CGGU------AGCUGugUaAGCAcc -5'
30913 5' -53.5 NC_006552.1 + 35431 0.67 0.830655
Target:  5'- gGGCCGCaGCCuUCGcgucuuGCGCGUUCGg-- -3'
miRNA:   3'- gCUGGCG-CGGuAGC------UGUGUAAGCacc -5'
30913 5' -53.5 NC_006552.1 + 63993 0.67 0.821705
Target:  5'- uGGCCGCcaaggGCCuggcCGGCACAccgcUUCGUGa -3'
miRNA:   3'- gCUGGCG-----CGGua--GCUGUGU----AAGCACc -5'
30913 5' -53.5 NC_006552.1 + 53091 0.68 0.803237
Target:  5'- aGAcCCGUGCCAgcccCACA-UCGUGGa -3'
miRNA:   3'- gCU-GGCGCGGUagcuGUGUaAGCACC- -5'
30913 5' -53.5 NC_006552.1 + 64708 0.68 0.784076
Target:  5'- uGACCGCGCuCAU--GCGCAUgcaagacgaCGUGGc -3'
miRNA:   3'- gCUGGCGCG-GUAgcUGUGUAa--------GCACC- -5'
30913 5' -53.5 NC_006552.1 + 55979 0.68 0.764304
Target:  5'- cCGGCCGCGCCGaaggccugUCGAUcaGC-UUCGaGGc -3'
miRNA:   3'- -GCUGGCGCGGU--------AGCUG--UGuAAGCaCC- -5'
30913 5' -53.5 NC_006552.1 + 5684 0.68 0.754216
Target:  5'- gGGCaGCGCUcUCGGCugAUUCGcGGc -3'
miRNA:   3'- gCUGgCGCGGuAGCUGugUAAGCaCC- -5'
30913 5' -53.5 NC_006552.1 + 8426 0.68 0.754216
Target:  5'- aGGCCGCGCCAggCG-CGCAgcagucccUCG-GGa -3'
miRNA:   3'- gCUGGCGCGGUa-GCuGUGUa-------AGCaCC- -5'
30913 5' -53.5 NC_006552.1 + 49845 0.69 0.702186
Target:  5'- aCGACaUGCGCCAccggcUCGACGCcg-CGUcGGa -3'
miRNA:   3'- -GCUG-GCGCGGU-----AGCUGUGuaaGCA-CC- -5'
30913 5' -53.5 NC_006552.1 + 21176 0.69 0.702186
Target:  5'- cCGGCCGCGUCGgugcCGGCACAUcCGc-- -3'
miRNA:   3'- -GCUGGCGCGGUa---GCUGUGUAaGCacc -5'
30913 5' -53.5 NC_006552.1 + 33410 0.72 0.562299
Target:  5'- aGACUGCGCCga-GGCGCucgcCGUGGa -3'
miRNA:   3'- gCUGGCGCGGuagCUGUGuaa-GCACC- -5'
30913 5' -53.5 NC_006552.1 + 41412 0.73 0.50991
Target:  5'- aGGCagCGCGCCAguUCGGcCGCGUcCGUGGg -3'
miRNA:   3'- gCUG--GCGCGGU--AGCU-GUGUAaGCACC- -5'
30913 5' -53.5 NC_006552.1 + 32475 0.75 0.385195
Target:  5'- -uACCGCGCCAccgaacuggUCGAUGCGcgCGUGGa -3'
miRNA:   3'- gcUGGCGCGGU---------AGCUGUGUaaGCACC- -5'
30913 5' -53.5 NC_006552.1 + 47500 0.78 0.27475
Target:  5'- uGACCGCugauaauuuucauGCCGUCGGCACAgaacaUCGUGa -3'
miRNA:   3'- gCUGGCG-------------CGGUAGCUGUGUa----AGCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.