miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30914 5' -51.4 NC_006552.1 + 28712 0.66 0.930267
Target:  5'- cGGCCuGGCAUUGuuGUcGAUcugcgggaaGCCGGCCGg -3'
miRNA:   3'- -CUGG-UCGUAAUu-CAaCUG---------CGGCUGGC- -5'
30914 5' -51.4 NC_006552.1 + 65064 0.66 0.930267
Target:  5'- cGACCAGUAcUGcaacGGaaccugGACGCCG-CCGg -3'
miRNA:   3'- -CUGGUCGUaAU----UCaa----CUGCGGCuGGC- -5'
30914 5' -51.4 NC_006552.1 + 9334 0.66 0.918388
Target:  5'- aACCAGCGUUugAAGgcGuCGCUGAgCGu -3'
miRNA:   3'- cUGGUCGUAA--UUCaaCuGCGGCUgGC- -5'
30914 5' -51.4 NC_006552.1 + 26295 0.66 0.91202
Target:  5'- -cCCAGCG---GGUaGuCGCCGGCCa -3'
miRNA:   3'- cuGGUCGUaauUCAaCuGCGGCUGGc -5'
30914 5' -51.4 NC_006552.1 + 32200 0.67 0.882983
Target:  5'- cACCGGCAU--GGUcgGGCGCgacauauCGGCCGg -3'
miRNA:   3'- cUGGUCGUAauUCAa-CUGCG-------GCUGGC- -5'
30914 5' -51.4 NC_006552.1 + 9741 0.68 0.859725
Target:  5'- cAUCAGCA------UGGCGCCGGCCu -3'
miRNA:   3'- cUGGUCGUaauucaACUGCGGCUGGc -5'
30914 5' -51.4 NC_006552.1 + 10771 0.68 0.859725
Target:  5'- uGCUcagGGCAUgcAGaUUGGCGCCGACgGc -3'
miRNA:   3'- cUGG---UCGUAauUC-AACUGCGGCUGgC- -5'
30914 5' -51.4 NC_006552.1 + 48684 0.68 0.851215
Target:  5'- aGAUCuacGCcc-GGGUUGGCGCCGuCCGg -3'
miRNA:   3'- -CUGGu--CGuaaUUCAACUGCGGCuGGC- -5'
30914 5' -51.4 NC_006552.1 + 7426 0.68 0.840691
Target:  5'- gGACCGGCugggucauGUUGACGaaGGCUGa -3'
miRNA:   3'- -CUGGUCGuaauu---CAACUGCggCUGGC- -5'
30914 5' -51.4 NC_006552.1 + 33760 0.69 0.785532
Target:  5'- --gCGGCAUUGcuGUUGAgcagaaCGCCGGCCGc -3'
miRNA:   3'- cugGUCGUAAUu-CAACU------GCGGCUGGC- -5'
30914 5' -51.4 NC_006552.1 + 19723 0.7 0.744129
Target:  5'- -uUCGGCGUcggccacGUUGGCGCUGGCCGc -3'
miRNA:   3'- cuGGUCGUAauu----CAACUGCGGCUGGC- -5'
30914 5' -51.4 NC_006552.1 + 33198 0.7 0.733455
Target:  5'- -uCCAGgug-GAGUUGcACGCCGGCCa -3'
miRNA:   3'- cuGGUCguaaUUCAAC-UGCGGCUGGc -5'
30914 5' -51.4 NC_006552.1 + 26891 0.71 0.689827
Target:  5'- -uUCGGCGacguuGUUGAUGCCGGCCa -3'
miRNA:   3'- cuGGUCGUaauu-CAACUGCGGCUGGc -5'
30914 5' -51.4 NC_006552.1 + 53571 0.71 0.689827
Target:  5'- cGCUuuGCAggGAGUcgaugUGGCGCCGGCCa -3'
miRNA:   3'- cUGGu-CGUaaUUCA-----ACUGCGGCUGGc -5'
30914 5' -51.4 NC_006552.1 + 5738 0.72 0.645276
Target:  5'- uGGCCAGCAgaccgaUGACGgCGACCa -3'
miRNA:   3'- -CUGGUCGUaauucaACUGCgGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.