Results 1 - 20 of 21 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 2061 | 0.67 | 0.421353 |
Target: 5'- aGCGc-GCCGGCGUCGuGcGCGGcCUGCu -3' miRNA: 3'- gCGCauCGGUCGCGGC-C-CGUCuGAUG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 12625 | 0.66 | 0.478284 |
Target: 5'- gGcCGUAGUCuGC-CCGGcGCuGGCUACg -3' miRNA: 3'- gC-GCAUCGGuCGcGGCC-CGuCUGAUG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 15335 | 0.66 | 0.488142 |
Target: 5'- cCGCGacgcacGGCCugcAGCGCC--GCAGGCUGCu -3' miRNA: 3'- -GCGCa-----UCGG---UCGCGGccCGUCUGAUG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 24406 | 0.68 | 0.385746 |
Target: 5'- cCGgGaAGCCGcuguaGCCGGGCAGACg-- -3' miRNA: 3'- -GCgCaUCGGUcg---CGGCCCGUCUGaug -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 24718 | 0.71 | 0.251508 |
Target: 5'- uCGgGUcguaggccaccAGCCGGCGCCGGGCcuGCUc- -3' miRNA: 3'- -GCgCA-----------UCGGUCGCGGCCCGucUGAug -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 32760 | 0.71 | 0.245306 |
Target: 5'- aCGC---GCCAGguCGCCGGGCAcGCUACg -3' miRNA: 3'- -GCGcauCGGUC--GCGGCCCGUcUGAUG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 33565 | 0.66 | 0.488142 |
Target: 5'- aGCa-GGCCAGCGCCGaaauacgcGGCGucCUGCg -3' miRNA: 3'- gCGcaUCGGUCGCGGC--------CCGUcuGAUG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 33739 | 0.66 | 0.498094 |
Target: 5'- uCGCcaaccGCCAGCGCgGcGGCGGcAUUGCu -3' miRNA: 3'- -GCGcau--CGGUCGCGgC-CCGUC-UGAUG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 35617 | 0.66 | 0.478284 |
Target: 5'- cCGCaauggAGUCGGCGuCCGGGUGGGCc-- -3' miRNA: 3'- -GCGca---UCGGUCGC-GGCCCGUCUGaug -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 38241 | 0.67 | 0.412265 |
Target: 5'- --gGUAGgCGGCGCCGGucuGCGGAUcGCg -3' miRNA: 3'- gcgCAUCgGUCGCGGCC---CGUCUGaUG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 39274 | 0.66 | 0.518263 |
Target: 5'- gGUGacAGCCAGCgcuGCCGGcGCAGGaaGCg -3' miRNA: 3'- gCGCa-UCGGUCG---CGGCC-CGUCUgaUG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 44094 | 0.71 | 0.239232 |
Target: 5'- cCGCGcucuUGGCCGGCGCCuGGGUuGAUagUGCu -3' miRNA: 3'- -GCGC----AUCGGUCGCGG-CCCGuCUG--AUG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 44466 | 0.73 | 0.17577 |
Target: 5'- uGCGcuGCCGGCGCCGG-CAGACg-- -3' miRNA: 3'- gCGCauCGGUCGCGGCCcGUCUGaug -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 47656 | 0.68 | 0.37716 |
Target: 5'- aGCGUGGCCGGCuGUCGGGaucuCAGGu--- -3' miRNA: 3'- gCGCAUCGGUCG-CGGCCC----GUCUgaug -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 52471 | 0.66 | 0.478284 |
Target: 5'- aGCaaacGCCAGCGCgUGGGCAacCUGCg -3' miRNA: 3'- gCGcau-CGGUCGCG-GCCCGUcuGAUG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 58202 | 0.66 | 0.488142 |
Target: 5'- gGcCGaAGCCAcgcuGCGCCGGGU-GGCUAa -3' miRNA: 3'- gC-GCaUCGGU----CGCGGCCCGuCUGAUg -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 58363 | 0.68 | 0.368703 |
Target: 5'- uCGcCGUGGCCAGCccaacaCUGGuGCAGACcgGCu -3' miRNA: 3'- -GC-GCAUCGGUCGc-----GGCC-CGUCUGa-UG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 58614 | 0.85 | 0.024537 |
Target: 5'- gGCGUcgguGGCC-GCGCCGGGCAGACUGa -3' miRNA: 3'- gCGCA----UCGGuCGCGGCCCGUCUGAUg -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 60354 | 0.66 | 0.488142 |
Target: 5'- --aGUGGCCGGCGaaGGGCcagucgcuAGACcACa -3' miRNA: 3'- gcgCAUCGGUCGCggCCCG--------UCUGaUG- -5' |
|||||||
30915 | 3' | -59.9 | NC_006552.1 | + | 60888 | 0.66 | 0.468525 |
Target: 5'- uGCGgcGCacCGGCGCuggcauauCGGGCGGACg-- -3' miRNA: 3'- gCGCauCG--GUCGCG--------GCCCGUCUGaug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home