miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30915 5' -49.4 NC_006552.1 + 61361 0.66 0.972735
Target:  5'- aGCAaCGUCGGGAgcCGGgccauguuuuGGCGCGCCGGc -3'
miRNA:   3'- -UGUaGUAGCUCU--GCU----------UCGUGUGGUUc -5'
30915 5' -49.4 NC_006552.1 + 28472 0.66 0.972735
Target:  5'- gAUAUCcacCGAGuCGAAGC-CGCCGAu -3'
miRNA:   3'- -UGUAGua-GCUCuGCUUCGuGUGGUUc -5'
30915 5' -49.4 NC_006552.1 + 50222 0.66 0.972735
Target:  5'- uGCGgcgAUCGAGGCGGcccgaAGCGCaaucgacaaaGCCAAGg -3'
miRNA:   3'- -UGUag-UAGCUCUGCU-----UCGUG----------UGGUUC- -5'
30915 5' -49.4 NC_006552.1 + 26885 0.66 0.967558
Target:  5'- gGCAUCuUCGGcGACGuuGUugaugccggccagcgGCACCAGGg -3'
miRNA:   3'- -UGUAGuAGCU-CUGCuuCG---------------UGUGGUUC- -5'
30915 5' -49.4 NC_006552.1 + 47528 0.66 0.962105
Target:  5'- cACAgaaCAUCGuGACGAcagaacaggccacAGCGaGCCAAGg -3'
miRNA:   3'- -UGUa--GUAGCuCUGCU-------------UCGUgUGGUUC- -5'
30915 5' -49.4 NC_006552.1 + 18863 0.67 0.954325
Target:  5'- aGCAUCAgcagugCGcuGACGguGCACAgCGAGa -3'
miRNA:   3'- -UGUAGUa-----GCu-CUGCuuCGUGUgGUUC- -5'
30915 5' -49.4 NC_006552.1 + 49118 0.67 0.949825
Target:  5'- cACGUCAgccgCGGcGCGcucAAGCGCAUCAAGc -3'
miRNA:   3'- -UGUAGUa---GCUcUGC---UUCGUGUGGUUC- -5'
30915 5' -49.4 NC_006552.1 + 30404 0.67 0.939964
Target:  5'- gACAccaGUCGGGugGAAGauaauCGCCAGGc -3'
miRNA:   3'- -UGUag-UAGCUCugCUUCgu---GUGGUUC- -5'
30915 5' -49.4 NC_006552.1 + 63129 0.68 0.934597
Target:  5'- --cUCAUCGAGcgcgGCGAAcacccGCACACCGc- -3'
miRNA:   3'- uguAGUAGCUC----UGCUU-----CGUGUGGUuc -5'
30915 5' -49.4 NC_006552.1 + 58456 0.68 0.928935
Target:  5'- cCGUCGUCGcAGGCGGcgugaAGCACGCa--- -3'
miRNA:   3'- uGUAGUAGC-UCUGCU-----UCGUGUGguuc -5'
30915 5' -49.4 NC_006552.1 + 32511 0.68 0.922977
Target:  5'- gGCAUCA-CGGGA----GCGCGCCAAGc -3'
miRNA:   3'- -UGUAGUaGCUCUgcuuCGUGUGGUUC- -5'
30915 5' -49.4 NC_006552.1 + 55216 0.69 0.896213
Target:  5'- -gGUCAUCGAGAaccuGCugGCCGAc -3'
miRNA:   3'- ugUAGUAGCUCUgcuuCGugUGGUUc -5'
30915 5' -49.4 NC_006552.1 + 51538 0.69 0.888803
Target:  5'- uCAUCGacgcCGAGGCGAAGCGgauCACCGc- -3'
miRNA:   3'- uGUAGUa---GCUCUGCUUCGU---GUGGUuc -5'
30915 5' -49.4 NC_006552.1 + 4475 0.7 0.864919
Target:  5'- -uGUCAUCGGGGuaaagcaGGauaGGCGCACCGAGc -3'
miRNA:   3'- ugUAGUAGCUCUg------CU---UCGUGUGGUUC- -5'
30915 5' -49.4 NC_006552.1 + 62107 0.71 0.810416
Target:  5'- gGCAgaucggCGUCGAGGCcAAGCugcaguugaACGCCAAGg -3'
miRNA:   3'- -UGUa-----GUAGCUCUGcUUCG---------UGUGGUUC- -5'
30915 5' -49.4 NC_006552.1 + 48609 0.72 0.748764
Target:  5'- cCGUCGUCGAGAacaGAGGCG-GCCAGa -3'
miRNA:   3'- uGUAGUAGCUCUg--CUUCGUgUGGUUc -5'
30915 5' -49.4 NC_006552.1 + 17932 0.73 0.716062
Target:  5'- ---cUAUCGGGAaccacgguuaccCGAGGCGCGCCGAGu -3'
miRNA:   3'- uguaGUAGCUCU------------GCUUCGUGUGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.