miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30917 3' -57.4 NC_006552.1 + 35833 0.66 0.583029
Target:  5'- -uGGCAgcCUGaGCCGCCGCCAguUGGuuguccuGCGAc -3'
miRNA:   3'- uuCCGU--GAC-CGGCGGUGGU--ACU-------UGUU- -5'
30917 3' -57.4 NC_006552.1 + 15562 0.66 0.573155
Target:  5'- cGGGGCuugcuGCUGcGCCGCCugguCCA-GGGCGAa -3'
miRNA:   3'- -UUCCG-----UGAC-CGGCGGu---GGUaCUUGUU- -5'
30917 3' -57.4 NC_006552.1 + 41155 0.66 0.56223
Target:  5'- --aGCGCUGGUCGCCGu--UGAACAGc -3'
miRNA:   3'- uucCGUGACCGGCGGUgguACUUGUU- -5'
30917 3' -57.4 NC_006552.1 + 13895 0.66 0.551363
Target:  5'- -uGGCuuGCUccacGGCCGCCugC-UGAGCAu -3'
miRNA:   3'- uuCCG--UGA----CCGGCGGugGuACUUGUu -5'
30917 3' -57.4 NC_006552.1 + 36168 0.66 0.551363
Target:  5'- -cGGCGCUGGCCucGCCAgCAUcgccGGCAc -3'
miRNA:   3'- uuCCGUGACCGG--CGGUgGUAc---UUGUu -5'
30917 3' -57.4 NC_006552.1 + 29799 0.67 0.519179
Target:  5'- gAAGGUucgccgGCgGGCCGCCACCcagcGUGAcguuGCGAc -3'
miRNA:   3'- -UUCCG------UGaCCGGCGGUGG----UACU----UGUU- -5'
30917 3' -57.4 NC_006552.1 + 65018 0.68 0.457272
Target:  5'- aAGGGCGCaaguuUGGCCGC-GCCAcucgcUGGGCAGa -3'
miRNA:   3'- -UUCCGUG-----ACCGGCGgUGGU-----ACUUGUU- -5'
30917 3' -57.4 NC_006552.1 + 63198 0.68 0.437521
Target:  5'- cAAGGCGuugucCUGGCCGCaACgGUGAACc- -3'
miRNA:   3'- -UUCCGU-----GACCGGCGgUGgUACUUGuu -5'
30917 3' -57.4 NC_006552.1 + 57500 0.69 0.399543
Target:  5'- uGGGC-CUgGGCCGCC-CgGUGAACGc -3'
miRNA:   3'- uUCCGuGA-CCGGCGGuGgUACUUGUu -5'
30917 3' -57.4 NC_006552.1 + 3573 0.7 0.346688
Target:  5'- cAGGUGCUGGCCgaGCCGCCGgcgccGGCAGg -3'
miRNA:   3'- uUCCGUGACCGG--CGGUGGUac---UUGUU- -5'
30917 3' -57.4 NC_006552.1 + 19740 0.7 0.314331
Target:  5'- -uGGCGCUGGCCGCUgcgcGCCAggcuucuaccUGGGCc- -3'
miRNA:   3'- uuCCGUGACCGGCGG----UGGU----------ACUUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.