miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30918 3' -62.8 NC_006552.1 + 59466 0.66 0.417114
Target:  5'- -gGCGGCuGAGCUgcuGGUGaGGCGCCa--- -3'
miRNA:   3'- ggCGCCG-CUCGG---CCAC-CUGCGGcucu -5'
30918 3' -62.8 NC_006552.1 + 38167 0.66 0.417114
Target:  5'- gCCGCGGU-AGCUGuUGG-UGCUGGGAa -3'
miRNA:   3'- -GGCGCCGcUCGGCcACCuGCGGCUCU- -5'
30918 3' -62.8 NC_006552.1 + 52046 0.66 0.399885
Target:  5'- gCCGCuGuCGAuCCGGaGG-CGCCGAGGg -3'
miRNA:   3'- -GGCGcC-GCUcGGCCaCCuGCGGCUCU- -5'
30918 3' -62.8 NC_006552.1 + 52007 0.66 0.399885
Target:  5'- gCCGCGGCGcGCCaGcaacuCGCCGAGc -3'
miRNA:   3'- -GGCGCCGCuCGGcCaccu-GCGGCUCu -5'
30918 3' -62.8 NC_006552.1 + 1743 0.67 0.391442
Target:  5'- gCCGCGGaUGAGCaguacguguaccUGGUGGGCGaggccaaCGAGc -3'
miRNA:   3'- -GGCGCC-GCUCG------------GCCACCUGCg------GCUCu -5'
30918 3' -62.8 NC_006552.1 + 14418 0.67 0.372471
Target:  5'- aCCGUGGCGcccugcccgcugcuGGCauCGGUGGugGaaCUGGGAa -3'
miRNA:   3'- -GGCGCCGC--------------UCG--GCCACCugC--GGCUCU- -5'
30918 3' -62.8 NC_006552.1 + 56865 0.67 0.366823
Target:  5'- gCCGCGGCGAG-CGGcGaACGCaGGGGu -3'
miRNA:   3'- -GGCGCCGCUCgGCCaCcUGCGgCUCU- -5'
30918 3' -62.8 NC_006552.1 + 31400 0.67 0.358857
Target:  5'- aCCGuCGGCGGcGCCGccaGUGGugGUCuucgcgguGAGAg -3'
miRNA:   3'- -GGC-GCCGCU-CGGC---CACCugCGG--------CUCU- -5'
30918 3' -62.8 NC_006552.1 + 1927 0.67 0.34329
Target:  5'- aCgGCGGCGucguuGUCGGgagugUGGACGaCGAGGg -3'
miRNA:   3'- -GgCGCCGCu----CGGCC-----ACCUGCgGCUCU- -5'
30918 3' -62.8 NC_006552.1 + 32703 0.72 0.184892
Target:  5'- gCCGgcCGGCGcggGGCCGGUGGAgCGCuCGAa- -3'
miRNA:   3'- -GGC--GCCGC---UCGGCCACCU-GCG-GCUcu -5'
30918 3' -62.8 NC_006552.1 + 28015 0.72 0.167202
Target:  5'- uCUGCGGCGAGUaCGGcGGcGCGCCGGu- -3'
miRNA:   3'- -GGCGCCGCUCG-GCCaCC-UGCGGCUcu -5'
30918 3' -62.8 NC_006552.1 + 58576 0.73 0.145733
Target:  5'- aCCGCGGCGAacugaugauagcgaGCCcguugauGGUGGGCGUCGGu- -3'
miRNA:   3'- -GGCGCCGCU--------------CGG-------CCACCUGCGGCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.