miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30919 3' -56.6 NC_006552.1 + 59916 0.66 0.675721
Target:  5'- uUCACCaaGGCGc-GCCGgacCGUGCUgUCCGg -3'
miRNA:   3'- -AGUGG--CCGUucCGGUa--GCACGA-AGGC- -5'
30919 3' -56.6 NC_006552.1 + 25795 0.66 0.675721
Target:  5'- gUACCGGCAcGGCCG--GUGaugCCGg -3'
miRNA:   3'- aGUGGCCGUuCCGGUagCACgaaGGC- -5'
30919 3' -56.6 NC_006552.1 + 37484 0.66 0.675721
Target:  5'- aUCACUauacGCAGGGCCGUUG-GCcaaUUCCa -3'
miRNA:   3'- -AGUGGc---CGUUCCGGUAGCaCG---AAGGc -5'
30919 3' -56.6 NC_006552.1 + 5279 0.66 0.654206
Target:  5'- gUUGCCGGCGAgcaagucgcGGCgCAUCGaGCUaCCGc -3'
miRNA:   3'- -AGUGGCCGUU---------CCG-GUAGCaCGAaGGC- -5'
30919 3' -56.6 NC_006552.1 + 26186 0.67 0.643414
Target:  5'- aCGCCcGCGccaguAGGCCAg-GUGCUUgCCGg -3'
miRNA:   3'- aGUGGcCGU-----UCCGGUagCACGAA-GGC- -5'
30919 3' -56.6 NC_006552.1 + 17088 0.67 0.632613
Target:  5'- aUAUCaGCGAGGCCAacaGccGCUUCCGg -3'
miRNA:   3'- aGUGGcCGUUCCGGUag-Ca-CGAAGGC- -5'
30919 3' -56.6 NC_006552.1 + 16654 0.67 0.632613
Target:  5'- cCGCCGGCAAGGgaaaaCAg---GCUUCCc -3'
miRNA:   3'- aGUGGCCGUUCCg----GUagcaCGAAGGc -5'
30919 3' -56.6 NC_006552.1 + 44476 0.67 0.611017
Target:  5'- gCGCCGGCAgacgccccAGGCguUCc-GCUUCCu -3'
miRNA:   3'- aGUGGCCGU--------UCCGguAGcaCGAAGGc -5'
30919 3' -56.6 NC_006552.1 + 14095 0.68 0.546918
Target:  5'- -gGCCGGCcGGGCCGcgcuucaugUCGcGCgcaUCCGg -3'
miRNA:   3'- agUGGCCGuUCCGGU---------AGCaCGa--AGGC- -5'
30919 3' -56.6 NC_006552.1 + 55975 0.69 0.504345
Target:  5'- uUCACCGGCcgcgccgAAGGCCuGUCGaucaGCUUCg- -3'
miRNA:   3'- -AGUGGCCG-------UUCCGG-UAGCa---CGAAGgc -5'
30919 3' -56.6 NC_006552.1 + 41544 0.7 0.465232
Target:  5'- cUCGCCGGCAuagugugcucaGGGUCAUCG-GgUaCCGg -3'
miRNA:   3'- -AGUGGCCGU-----------UCCGGUAGCaCgAaGGC- -5'
30919 3' -56.6 NC_006552.1 + 20963 0.72 0.338805
Target:  5'- gCACCGGgAuGGCCGUCaUGCUcggcgcgUCCGg -3'
miRNA:   3'- aGUGGCCgUuCCGGUAGcACGA-------AGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.