miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30919 5' -56.7 NC_006552.1 + 44798 0.66 0.708393
Target:  5'- aGCGGcAACCGUgaAUCGUCc--GCCCUCc -3'
miRNA:   3'- cCGUC-UUGGCG--UAGCAGuacCGGGGG- -5'
30919 5' -56.7 NC_006552.1 + 21053 0.66 0.676727
Target:  5'- -cCAGGucgGCCaGCAggUCGUCGauauucaGGCCCCCa -3'
miRNA:   3'- ccGUCU---UGG-CGU--AGCAGUa------CCGGGGG- -5'
30919 5' -56.7 NC_006552.1 + 53989 0.66 0.676727
Target:  5'- aGGCAGGccaGgCGCGUgGcCcUGGCCCUg -3'
miRNA:   3'- -CCGUCU---UgGCGUAgCaGuACCGGGGg -5'
30919 5' -56.7 NC_006552.1 + 58139 0.67 0.6554
Target:  5'- cGCAGccGACUGCAUCGaC-UGGUcguaCCCCa -3'
miRNA:   3'- cCGUC--UUGGCGUAGCaGuACCG----GGGG- -5'
30919 5' -56.7 NC_006552.1 + 58413 0.67 0.6554
Target:  5'- gGGCAGcAACCGCGagUGcCA-GGCCUCg -3'
miRNA:   3'- -CCGUC-UUGGCGUa-GCaGUaCCGGGGg -5'
30919 5' -56.7 NC_006552.1 + 16363 0.67 0.644701
Target:  5'- uGCAGAACCGCcgCc----GGCCCgCCc -3'
miRNA:   3'- cCGUCUUGGCGuaGcaguaCCGGG-GG- -5'
30919 5' -56.7 NC_006552.1 + 5509 0.67 0.644701
Target:  5'- gGGUGGAGCCGUaaccgAUgGUCGgaaUGuCCCCCu -3'
miRNA:   3'- -CCGUCUUGGCG-----UAgCAGU---ACcGGGGG- -5'
30919 5' -56.7 NC_006552.1 + 40289 0.67 0.63399
Target:  5'- cGUAGuGCCGCAggucuUCGUUGUGuGCCUCg -3'
miRNA:   3'- cCGUCuUGGCGU-----AGCAGUAC-CGGGGg -5'
30919 5' -56.7 NC_006552.1 + 38668 0.68 0.580591
Target:  5'- -cCGGAACUggGCGUCaGUCAUGGCUaCCg -3'
miRNA:   3'- ccGUCUUGG--CGUAG-CAGUACCGGgGG- -5'
30919 5' -56.7 NC_006552.1 + 52266 0.68 0.580591
Target:  5'- cGCuGAAuCUGCcgggcgugAUCGUCGaaaaGGCCCCCg -3'
miRNA:   3'- cCGuCUU-GGCG--------UAGCAGUa---CCGGGGG- -5'
30919 5' -56.7 NC_006552.1 + 22272 0.68 0.580591
Target:  5'- cGCGGAgccggucgcucGCCGCAUCGcUgAUGGUUgCCu -3'
miRNA:   3'- cCGUCU-----------UGGCGUAGC-AgUACCGGgGG- -5'
30919 5' -56.7 NC_006552.1 + 31405 0.69 0.538546
Target:  5'- cGGCGGcGCCGCca-GUgGUGGUCUUCg -3'
miRNA:   3'- -CCGUCuUGGCGuagCAgUACCGGGGG- -5'
30919 5' -56.7 NC_006552.1 + 40956 0.69 0.538546
Target:  5'- aGGCGGuggauggugccgGACCGCAUgGaCGUGGCCaCgCg -3'
miRNA:   3'- -CCGUC------------UUGGCGUAgCaGUACCGG-GgG- -5'
30919 5' -56.7 NC_006552.1 + 11262 0.69 0.517907
Target:  5'- cGCGG-AUCGCGUCGgccaaUAUGGCCCaugCCg -3'
miRNA:   3'- cCGUCuUGGCGUAGCa----GUACCGGG---GG- -5'
30919 5' -56.7 NC_006552.1 + 24701 0.69 0.517907
Target:  5'- cGGCGGAagcGCCGCuuUCGggUCGUaGGCCaCCa -3'
miRNA:   3'- -CCGUCU---UGGCGu-AGC--AGUA-CCGGgGG- -5'
30919 5' -56.7 NC_006552.1 + 50101 0.69 0.517907
Target:  5'- gGGCGGAACgCGCAgcacggCGgcgCGUugaaagcuacGGCCCCg -3'
miRNA:   3'- -CCGUCUUG-GCGUa-----GCa--GUA----------CCGGGGg -5'
30919 5' -56.7 NC_006552.1 + 43470 0.69 0.507705
Target:  5'- cGGCAGGugCGCGaacacCGUCGUgucGGUCCUg -3'
miRNA:   3'- -CCGUCUugGCGUa----GCAGUA---CCGGGGg -5'
30919 5' -56.7 NC_006552.1 + 62992 0.69 0.496583
Target:  5'- cGGCGGAccugcGCCGCcaggUGUUggagaaaAUGGCCgCCCa -3'
miRNA:   3'- -CCGUCU-----UGGCGua--GCAG-------UACCGG-GGG- -5'
30919 5' -56.7 NC_006552.1 + 23079 0.7 0.467812
Target:  5'- aGGCacAGAGCCcuGCGUCGuuuccUCGUGGgaacugcguCCCCCg -3'
miRNA:   3'- -CCG--UCUUGG--CGUAGC-----AGUACC---------GGGGG- -5'
30919 5' -56.7 NC_006552.1 + 62405 0.71 0.420328
Target:  5'- cGCGGAacGCUGCcauGUCccgaUCGUGGUCCCCg -3'
miRNA:   3'- cCGUCU--UGGCG---UAGc---AGUACCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.