miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30920 3' -58.8 NC_006552.1 + 44561 0.66 0.553707
Target:  5'- gACgGGCAGCGccUGCUGC-CUGgCACg -3'
miRNA:   3'- -UGgCCGUCGCucAUGGCGaGAC-GUGa -5'
30920 3' -58.8 NC_006552.1 + 48318 0.66 0.543231
Target:  5'- cCCGGCGGCGA---CCGUUgCUGC-CUg -3'
miRNA:   3'- uGGCCGUCGCUcauGGCGA-GACGuGA- -5'
30920 3' -58.8 NC_006552.1 + 33214 0.66 0.543231
Target:  5'- cGCCGGcCAG-GA-UGCCGCgCUGCAUg -3'
miRNA:   3'- -UGGCC-GUCgCUcAUGGCGaGACGUGa -5'
30920 3' -58.8 NC_006552.1 + 28014 0.67 0.512223
Target:  5'- uUCuGCGGCGAGUACgGCg--GCGCg -3'
miRNA:   3'- uGGcCGUCGCUCAUGgCGagaCGUGa -5'
30920 3' -58.8 NC_006552.1 + 15481 0.67 0.472078
Target:  5'- aGCCGGUuguGCGGcUugCGCcugCUGCGCg -3'
miRNA:   3'- -UGGCCGu--CGCUcAugGCGa--GACGUGa -5'
30920 3' -58.8 NC_006552.1 + 7621 0.67 0.472078
Target:  5'- gACCGGCGGCG-GUuuGCCGC---GCAUUg -3'
miRNA:   3'- -UGGCCGUCGCuCA--UGGCGagaCGUGA- -5'
30920 3' -58.8 NC_006552.1 + 44432 0.68 0.442089
Target:  5'- aACCGGCu-CGAGUACgUGCUguucgagcagcaaCUGCGCUg -3'
miRNA:   3'- -UGGCCGucGCUCAUG-GCGA-------------GACGUGA- -5'
30920 3' -58.8 NC_006552.1 + 55417 0.68 0.405945
Target:  5'- cACCGGCGGCuacGUACUGUUCgccCACUa -3'
miRNA:   3'- -UGGCCGUCGcu-CAUGGCGAGac-GUGA- -5'
30920 3' -58.8 NC_006552.1 + 5386 0.69 0.370864
Target:  5'- cGCCgGGCAGCGAGUcGCgGaaCUGCugUu -3'
miRNA:   3'- -UGG-CCGUCGCUCA-UGgCgaGACGugA- -5'
30920 3' -58.8 NC_006552.1 + 35090 0.69 0.362424
Target:  5'- cUCGGCGucGCuGGUGCCGCUCgGCAUc -3'
miRNA:   3'- uGGCCGU--CGcUCAUGGCGAGaCGUGa -5'
30920 3' -58.8 NC_006552.1 + 7211 0.71 0.285498
Target:  5'- cCCGGCgcgcAGCGAGccgcUGCCGCgggcCUGCGCc -3'
miRNA:   3'- uGGCCG----UCGCUC----AUGGCGa---GACGUGa -5'
30920 3' -58.8 NC_006552.1 + 51989 0.72 0.252134
Target:  5'- cGCCaGCAGCGAGagcuUGCCGCg--GCGCg -3'
miRNA:   3'- -UGGcCGUCGCUC----AUGGCGagaCGUGa -5'
30920 3' -58.8 NC_006552.1 + 61981 0.72 0.233103
Target:  5'- cGCCGcugugcaGCAGCGAG-GCCGaaCUCUGCGCg -3'
miRNA:   3'- -UGGC-------CGUCGCUCaUGGC--GAGACGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.