miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30920 5' -63.8 NC_006552.1 + 61719 0.66 0.332821
Target:  5'- ---cCGC-GCGCGGGuacGCGCCCugGCCGAa -3'
miRNA:   3'- caucGCGaCGCGCUC---CGCGGG--CGGCU- -5'
30920 5' -63.8 NC_006552.1 + 2052 0.66 0.325283
Target:  5'- -aGGCGCUugaGCGCGccGGCgucgugcgcgGCCUGCUGAu -3'
miRNA:   3'- caUCGCGA---CGCGCu-CCG----------CGGGCGGCU- -5'
30920 5' -63.8 NC_006552.1 + 26335 0.66 0.317873
Target:  5'- ---uCGCUcGCGUcagguaGAGGCGCgCGCCGGu -3'
miRNA:   3'- caucGCGA-CGCG------CUCCGCGgGCGGCU- -5'
30920 5' -63.8 NC_006552.1 + 7449 0.66 0.310591
Target:  5'- -aAG-GCUGaCGCGAcGGa-CCCGCCGAg -3'
miRNA:   3'- caUCgCGAC-GCGCU-CCgcGGGCGGCU- -5'
30920 5' -63.8 NC_006552.1 + 15041 0.67 0.296408
Target:  5'- -cGGgGCUGCGCaGcAGGCuGUUgGCCGAa -3'
miRNA:   3'- caUCgCGACGCG-C-UCCG-CGGgCGGCU- -5'
30920 5' -63.8 NC_006552.1 + 26563 0.67 0.295713
Target:  5'- -cGGC-CUGCGCGccaucguAGGUgaagauGCCCGCCGu -3'
miRNA:   3'- caUCGcGACGCGC-------UCCG------CGGGCGGCu -5'
30920 5' -63.8 NC_006552.1 + 21426 0.67 0.289508
Target:  5'- -aAGUGcCUGcCGCGcAGGC-CCCGgCCGAa -3'
miRNA:   3'- caUCGC-GAC-GCGC-UCCGcGGGC-GGCU- -5'
30920 5' -63.8 NC_006552.1 + 28673 0.67 0.289508
Target:  5'- aGUGGUGauCUGCG-GcGGCGCCaCGCCGc -3'
miRNA:   3'- -CAUCGC--GACGCgCuCCGCGG-GCGGCu -5'
30920 5' -63.8 NC_006552.1 + 7335 0.67 0.276087
Target:  5'- -gAGCGCUGCGCcaucugucGuGCuGCCCGCCc- -3'
miRNA:   3'- caUCGCGACGCGcu------C-CG-CGGGCGGcu -5'
30920 5' -63.8 NC_006552.1 + 31651 0.68 0.250136
Target:  5'- --cGCGCUGCuGCGGGGUuuugaauaacgguGCCUucgucgGCCGAg -3'
miRNA:   3'- cauCGCGACG-CGCUCCG-------------CGGG------CGGCU- -5'
30920 5' -63.8 NC_006552.1 + 5997 0.68 0.244716
Target:  5'- -cAGCGUUGCGCGGGuGCGCUC-CaGAu -3'
miRNA:   3'- caUCGCGACGCGCUC-CGCGGGcGgCU- -5'
30920 5' -63.8 NC_006552.1 + 13289 0.68 0.227351
Target:  5'- --uGgGCUGCGCGggaucgggcuuGGGUGCCUcuGCCGGu -3'
miRNA:   3'- cauCgCGACGCGC-----------UCCGCGGG--CGGCU- -5'
30920 5' -63.8 NC_006552.1 + 50282 0.7 0.181432
Target:  5'- -aAGCcaaaUGCGacuGGCGCCCGCCGGg -3'
miRNA:   3'- caUCGcg--ACGCgcuCCGCGGGCGGCU- -5'
30920 5' -63.8 NC_006552.1 + 37805 0.71 0.163371
Target:  5'- -cGGCGCgaucauuggcaucUGCGCGAucugGGCGCCgGCCu- -3'
miRNA:   3'- caUCGCG-------------ACGCGCU----CCGCGGgCGGcu -5'
30920 5' -63.8 NC_006552.1 + 54724 0.71 0.151589
Target:  5'- gGUGGCgacuucugGCUGUGCGAcGGCGCCCuGCUc- -3'
miRNA:   3'- -CAUCG--------CGACGCGCU-CCGCGGG-CGGcu -5'
30920 5' -63.8 NC_006552.1 + 31840 0.72 0.122023
Target:  5'- -gGGUGaUGCGCcgcaggucggagucGGGGCGCUCGCCGAa -3'
miRNA:   3'- caUCGCgACGCG--------------CUCCGCGGGCGGCU- -5'
30920 5' -63.8 NC_006552.1 + 52941 0.73 0.11362
Target:  5'- --cGC-CUGCGCc-GGCGCCCGCCGc -3'
miRNA:   3'- cauCGcGACGCGcuCCGCGGGCGGCu -5'
30920 5' -63.8 NC_006552.1 + 33402 0.79 0.039431
Target:  5'- -cGGCGCuuagacUGCGcCGAGGCGCUCGCCGu -3'
miRNA:   3'- caUCGCG------ACGC-GCUCCGCGGGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.