miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30922 5' -54.1 NC_006552.1 + 22076 0.85 0.083752
Target:  5'- cGCGCGGCAUCCAGCACcaggguGUAC-GCAUGa -3'
miRNA:   3'- -CGCGCUGUAGGUCGUG------CAUGuCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 5619 0.8 0.172582
Target:  5'- aGCGCGGCAaCCAGCACGcgguUACGGCuguuCGa -3'
miRNA:   3'- -CGCGCUGUaGGUCGUGC----AUGUCGu---GC- -5'
30922 5' -54.1 NC_006552.1 + 52964 0.76 0.305329
Target:  5'- gGUGCGGCAUCCGgguGCGCGUucauCgAGCGCGc -3'
miRNA:   3'- -CGCGCUGUAGGU---CGUGCAu---G-UCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 50083 0.75 0.3191
Target:  5'- aGCGCGACAaCC-GCACGcgggcggaacgcGCAGCACGg -3'
miRNA:   3'- -CGCGCUGUaGGuCGUGCa-----------UGUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 26880 0.75 0.339805
Target:  5'- aGCGCGGCAUCUucGGCgACGUuguugaugccggccaGCGGCACc -3'
miRNA:   3'- -CGCGCUGUAGG--UCG-UGCA---------------UGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 22371 0.74 0.396624
Target:  5'- uGUGCaGCA-CCAGCAgccCGUACAGCACc -3'
miRNA:   3'- -CGCGcUGUaGGUCGU---GCAUGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 33358 0.72 0.503716
Target:  5'- uGCGUGACAgaagggCCAGCACGggcCGGCccuucguaggGCGg -3'
miRNA:   3'- -CGCGCUGUa-----GGUCGUGCau-GUCG----------UGC- -5'
30922 5' -54.1 NC_006552.1 + 14119 0.71 0.556415
Target:  5'- cGCGCG-CAUCCGGCGcCGUcaugugAguGCGCu -3'
miRNA:   3'- -CGCGCuGUAGGUCGU-GCA------UguCGUGc -5'
30922 5' -54.1 NC_006552.1 + 49184 0.71 0.556415
Target:  5'- uGCgGCGGCcugGUCCGGCugGU-CAGCAa- -3'
miRNA:   3'- -CG-CGCUG---UAGGUCGugCAuGUCGUgc -5'
30922 5' -54.1 NC_006552.1 + 738 0.71 0.545728
Target:  5'- cCGCGACGUgCAGCGCucccCGGCGCu -3'
miRNA:   3'- cGCGCUGUAgGUCGUGcau-GUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 352 0.71 0.535109
Target:  5'- cCGCGACAg-CGGCACGauauacgGCGGCACc -3'
miRNA:   3'- cGCGCUGUagGUCGUGCa------UGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 21862 0.7 0.588802
Target:  5'- cGCGCGcCgccagaugGUCCAGCAC---CAGCGCGg -3'
miRNA:   3'- -CGCGCuG--------UAGGUCGUGcauGUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 20888 0.7 0.62151
Target:  5'- aGCGCuuccAUGUCCGGCAUGgcgaucUGCGGCGCa -3'
miRNA:   3'- -CGCGc---UGUAGGUCGUGC------AUGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 32152 0.7 0.62151
Target:  5'- uGCGCGcCAuUCCGGCagcuccACGUcCAGCACc -3'
miRNA:   3'- -CGCGCuGU-AGGUCG------UGCAuGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 13381 0.69 0.674989
Target:  5'- aCGCGGCGuuucgacUCCGGCACGcucaUGCcGCGCu -3'
miRNA:   3'- cGCGCUGU-------AGGUCGUGC----AUGuCGUGc -5'
30922 5' -54.1 NC_006552.1 + 26393 0.69 0.654299
Target:  5'- -gGUGACuUCCAGCGCGc-CGGCAuCGg -3'
miRNA:   3'- cgCGCUGuAGGUCGUGCauGUCGU-GC- -5'
30922 5' -54.1 NC_006552.1 + 1709 0.69 0.643376
Target:  5'- cGCuGCGAUAcgUCAGCAC--GCAGCAUGg -3'
miRNA:   3'- -CG-CGCUGUa-GGUCGUGcaUGUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 37778 0.68 0.697685
Target:  5'- cGCGCucuGCAUCaCAGCGuCGgcgauCGGCGCGa -3'
miRNA:   3'- -CGCGc--UGUAG-GUCGU-GCau---GUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 10790 0.68 0.708401
Target:  5'- gGCGcCGACggcauugcGUCCGGCGaacgaGUACuGCACa -3'
miRNA:   3'- -CGC-GCUG--------UAGGUCGUg----CAUGuCGUGc -5'
30922 5' -54.1 NC_006552.1 + 39352 0.68 0.719044
Target:  5'- uCGCGACGgauaggCCGGCA---GCGGUACGg -3'
miRNA:   3'- cGCGCUGUa-----GGUCGUgcaUGUCGUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.