miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30922 5' -54.1 NC_006552.1 + 12226 0.66 0.836946
Target:  5'- aGCGCGGgcggcCAUCC-GCGC--ACGGCGCu -3'
miRNA:   3'- -CGCGCU-----GUAGGuCGUGcaUGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 33053 0.66 0.836066
Target:  5'- cUGCGAC-UCgGGCaacucgGCGUagggaacGCAGCACGg -3'
miRNA:   3'- cGCGCUGuAGgUCG------UGCA-------UGUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 25221 0.66 0.828051
Target:  5'- aGCGCGGCG-CC-GUugACGUugAGCuGCGa -3'
miRNA:   3'- -CGCGCUGUaGGuCG--UGCAugUCG-UGC- -5'
30922 5' -54.1 NC_006552.1 + 2063 0.66 0.828051
Target:  5'- cGCGcCGGCGUCguGCGCGgcCuGCugauCGa -3'
miRNA:   3'- -CGC-GCUGUAGguCGUGCauGuCGu---GC- -5'
30922 5' -54.1 NC_006552.1 + 19085 0.66 0.825342
Target:  5'- uGCGUGGCAUCCuucauugcauccagAGCcuucACGccaACGGCAUGa -3'
miRNA:   3'- -CGCGCUGUAGG--------------UCG----UGCa--UGUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 42165 0.66 0.818953
Target:  5'- aGCGCGcaGUCuUGGCGCuGUACuuGGCACGg -3'
miRNA:   3'- -CGCGCugUAG-GUCGUG-CAUG--UCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 20941 0.66 0.818953
Target:  5'- gGUGuCGAUGUCCGG-GCGUcCGGCACc -3'
miRNA:   3'- -CGC-GCUGUAGGUCgUGCAuGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 20265 0.66 0.809661
Target:  5'- -aGCcGCAUCCAGcUugGUGCGGUAg- -3'
miRNA:   3'- cgCGcUGUAGGUC-GugCAUGUCGUgc -5'
30922 5' -54.1 NC_006552.1 + 31892 0.67 0.790535
Target:  5'- -aGCGGCuucggCCAGCGCGgcGCGGUuCGg -3'
miRNA:   3'- cgCGCUGua---GGUCGUGCa-UGUCGuGC- -5'
30922 5' -54.1 NC_006552.1 + 9707 0.67 0.780723
Target:  5'- aGCGCaugucGGCAUCCuugacgcuGGCGCGauucauCAGCAUGg -3'
miRNA:   3'- -CGCG-----CUGUAGG--------UCGUGCau----GUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 28225 0.67 0.780723
Target:  5'- uCGCGACcUCCGGCgucACGUuguggauGCGCGg -3'
miRNA:   3'- cGCGCUGuAGGUCG---UGCAugu----CGUGC- -5'
30922 5' -54.1 NC_006552.1 + 21161 0.67 0.770759
Target:  5'- aCGCGauaggcGCAUCCGGcCGCGUcggugcCGGCACa -3'
miRNA:   3'- cGCGC------UGUAGGUC-GUGCAu-----GUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 10206 0.67 0.770759
Target:  5'- gGCGCGAUAUCuCGGCgcaaACGUGgAGuCAUc -3'
miRNA:   3'- -CGCGCUGUAG-GUCG----UGCAUgUC-GUGc -5'
30922 5' -54.1 NC_006552.1 + 33739 0.67 0.750418
Target:  5'- uCGCcaACcgCCAGCGCGgcgGCGGCAUu -3'
miRNA:   3'- cGCGc-UGuaGGUCGUGCa--UGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 8245 0.67 0.749388
Target:  5'- gGCGCGGgccauggUGUCCAGgcUACGgucggugGCGGCGCGg -3'
miRNA:   3'- -CGCGCU-------GUAGGUC--GUGCa------UGUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 39274 0.68 0.740064
Target:  5'- -gGUGACAgCCAGCGCugcCGGCGCa -3'
miRNA:   3'- cgCGCUGUaGGUCGUGcauGUCGUGc -5'
30922 5' -54.1 NC_006552.1 + 62272 0.68 0.726444
Target:  5'- uGUGCGGCAUCgCAGUacucgcuccgucccGCGgacaccguCGGCGCGa -3'
miRNA:   3'- -CGCGCUGUAG-GUCG--------------UGCau------GUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 43724 0.68 0.719044
Target:  5'- cGCcaaCGAC-UCCGGCACGa--GGCGCGa -3'
miRNA:   3'- -CGc--GCUGuAGGUCGUGCaugUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 39352 0.68 0.719044
Target:  5'- uCGCGACGgauaggCCGGCA---GCGGUACGg -3'
miRNA:   3'- cGCGCUGUa-----GGUCGUgcaUGUCGUGC- -5'
30922 5' -54.1 NC_006552.1 + 10790 0.68 0.708401
Target:  5'- gGCGcCGACggcauugcGUCCGGCGaacgaGUACuGCACa -3'
miRNA:   3'- -CGC-GCUG--------UAGGUCGUg----CAUGuCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.