miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30924 3' -56.2 NC_006552.1 + 34067 0.76 0.207233
Target:  5'- cGAUCAgCAGuuCCAGCuuGUCGCCGUGGUc -3'
miRNA:   3'- -CUAGUaGUCc-GGUCG--UAGCGGCACCG- -5'
30924 3' -56.2 NC_006552.1 + 30796 0.72 0.343019
Target:  5'- -uUCGUCuGGCCAGUAgccuuUCGCC-UGGUg -3'
miRNA:   3'- cuAGUAGuCCGGUCGU-----AGCGGcACCG- -5'
30924 3' -56.2 NC_006552.1 + 58348 0.71 0.38566
Target:  5'- -cUCGcgGGGgCAGUuUCGCCGUGGCc -3'
miRNA:   3'- cuAGUagUCCgGUCGuAGCGGCACCG- -5'
30924 3' -56.2 NC_006552.1 + 36164 0.71 0.394598
Target:  5'- --gCAUCGGcgcuggccucGCCAGCAUCGCCGgcacccgcgucGGCu -3'
miRNA:   3'- cuaGUAGUC----------CGGUCGUAGCGGCa----------CCG- -5'
30924 3' -56.2 NC_006552.1 + 60537 0.7 0.454848
Target:  5'- --cCGUCucGGCCAGCAccguucgccggcgacUCGCCGcaGGCa -3'
miRNA:   3'- cuaGUAGu-CCGGUCGU---------------AGCGGCa-CCG- -5'
30924 3' -56.2 NC_006552.1 + 31273 0.7 0.46075
Target:  5'- uGAUCggCAGGCCGGUA--GCCGUGuCg -3'
miRNA:   3'- -CUAGuaGUCCGGUCGUagCGGCACcG- -5'
30924 3' -56.2 NC_006552.1 + 18049 0.7 0.474676
Target:  5'- cAUCAggcguUCGGGCCAGCAgguucuccacugcgCGCUGguuuugGGCa -3'
miRNA:   3'- cUAGU-----AGUCCGGUCGUa-------------GCGGCa-----CCG- -5'
30924 3' -56.2 NC_006552.1 + 5425 0.69 0.480709
Target:  5'- --cCAUCAGGCUGcGCGccaguuguUCGCCGcgcUGGCg -3'
miRNA:   3'- cuaGUAGUCCGGU-CGU--------AGCGGC---ACCG- -5'
30924 3' -56.2 NC_006552.1 + 41565 0.69 0.511407
Target:  5'- gGGUCAUCGGGUaccggcuugaaGGCAUUGCCacUGGUa -3'
miRNA:   3'- -CUAGUAGUCCGg----------UCGUAGCGGc-ACCG- -5'
30924 3' -56.2 NC_006552.1 + 6836 0.69 0.511407
Target:  5'- cGAUCAUCAGGgCAGCAgccuucCGaCCGUccuuGCg -3'
miRNA:   3'- -CUAGUAGUCCgGUCGUa-----GC-GGCAc---CG- -5'
30924 3' -56.2 NC_006552.1 + 23989 0.69 0.511407
Target:  5'- --gCAUCAGGCCGGUGUCGUCa---- -3'
miRNA:   3'- cuaGUAGUCCGGUCGUAGCGGcaccg -5'
30924 3' -56.2 NC_006552.1 + 44364 0.69 0.532318
Target:  5'- -uUCGUCAGuGCCAGCA--GCCGgucggagGGUc -3'
miRNA:   3'- cuAGUAGUC-CGGUCGUagCGGCa------CCG- -5'
30924 3' -56.2 NC_006552.1 + 39768 0.68 0.553528
Target:  5'- -uUCGUCcacGGUCAGCggcguGUCGCCcgcagGUGGCa -3'
miRNA:   3'- cuAGUAGu--CCGGUCG-----UAGCGG-----CACCG- -5'
30924 3' -56.2 NC_006552.1 + 55676 0.68 0.574982
Target:  5'- -uUCAUCGGcuGCCAGgAaggggucgaUCGCCG-GGCg -3'
miRNA:   3'- cuAGUAGUC--CGGUCgU---------AGCGGCaCCG- -5'
30924 3' -56.2 NC_006552.1 + 63816 0.68 0.574982
Target:  5'- -uUCGgcgccCAGGCCAGCca-GCCGccGGCg -3'
miRNA:   3'- cuAGUa----GUCCGGUCGuagCGGCa-CCG- -5'
30924 3' -56.2 NC_006552.1 + 35869 0.68 0.585782
Target:  5'- --aCGUCGGgGCCucGCc-UGCCGUGGCg -3'
miRNA:   3'- cuaGUAGUC-CGGu-CGuaGCGGCACCG- -5'
30924 3' -56.2 NC_006552.1 + 45345 0.67 0.59662
Target:  5'- gGGUCuuUCGGGCCuGGCAugUCGgCCGguaucUGGCa -3'
miRNA:   3'- -CUAGu-AGUCCGG-UCGU--AGC-GGC-----ACCG- -5'
30924 3' -56.2 NC_006552.1 + 51521 0.67 0.607488
Target:  5'- cAUCGaggCAGGCCAGauCAUCgacGCCGaGGCg -3'
miRNA:   3'- cUAGUa--GUCCGGUC--GUAG---CGGCaCCG- -5'
30924 3' -56.2 NC_006552.1 + 36342 0.67 0.618377
Target:  5'- --cUAUCccGCCAcaUAUCGCCGUGGCc -3'
miRNA:   3'- cuaGUAGucCGGUc-GUAGCGGCACCG- -5'
30924 3' -56.2 NC_006552.1 + 26341 0.67 0.628187
Target:  5'- --gCGUCAGGUagaGGCGcgCGCCGgucacacUGGCa -3'
miRNA:   3'- cuaGUAGUCCGg--UCGUa-GCGGC-------ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.