miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30924 5' -54.3 NC_006552.1 + 30868 0.65 0.820056
Target:  5'- gGCGCCGUagcgcacaccguaGUCGAUA--GCCCACUg- -3'
miRNA:   3'- -CGCGGUAg------------UAGCUAUacCGGGUGGag -5'
30924 5' -54.3 NC_006552.1 + 36124 0.66 0.814481
Target:  5'- cGCGCCAguguUCuguUCGGUGUuGUCUGCCUg -3'
miRNA:   3'- -CGCGGU----AGu--AGCUAUAcCGGGUGGAg -5'
30924 5' -54.3 NC_006552.1 + 12902 0.66 0.805037
Target:  5'- uGCGCCuugauGUCGUCGucgGUGGUguUCGCCa- -3'
miRNA:   3'- -CGCGG-----UAGUAGCua-UACCG--GGUGGag -5'
30924 5' -54.3 NC_006552.1 + 25907 0.66 0.785617
Target:  5'- -aGCCAUCcggUGAUGcguUGGUgccuaCCACCUCg -3'
miRNA:   3'- cgCGGUAGua-GCUAU---ACCG-----GGUGGAG- -5'
30924 5' -54.3 NC_006552.1 + 18900 0.67 0.744953
Target:  5'- uGCuGCUcggCAUCGAUGuUGGCCUggGCCUUc -3'
miRNA:   3'- -CG-CGGua-GUAGCUAU-ACCGGG--UGGAG- -5'
30924 5' -54.3 NC_006552.1 + 55200 0.67 0.74391
Target:  5'- -aGCUggguaacucccagGUCAUCGAgaaccugcUGGCCgACCUCa -3'
miRNA:   3'- cgCGG-------------UAGUAGCUau------ACCGGgUGGAG- -5'
30924 5' -54.3 NC_006552.1 + 2063 0.67 0.734473
Target:  5'- cGCGCCggCGUCGugcgcGGCCUGCUgaUCg -3'
miRNA:   3'- -CGCGGuaGUAGCuaua-CCGGGUGG--AG- -5'
30924 5' -54.3 NC_006552.1 + 4949 0.67 0.734473
Target:  5'- uGCGCgGUCAgcUCGGccagcuUGGCCUcaGCCUUg -3'
miRNA:   3'- -CGCGgUAGU--AGCUau----ACCGGG--UGGAG- -5'
30924 5' -54.3 NC_006552.1 + 8138 0.67 0.72389
Target:  5'- uGCGCCAggUgGUCGcgcaGUAUcgcGGCCC-CCUCc -3'
miRNA:   3'- -CGCGGU--AgUAGC----UAUA---CCGGGuGGAG- -5'
30924 5' -54.3 NC_006552.1 + 43244 0.67 0.72389
Target:  5'- aGCGCUuggaAUCGAUGcUGGCUCACgCUg -3'
miRNA:   3'- -CGCGGuag-UAGCUAU-ACCGGGUG-GAg -5'
30924 5' -54.3 NC_006552.1 + 13941 0.67 0.72389
Target:  5'- aGCGCCcgCGUCGc---GGgCCACgUCg -3'
miRNA:   3'- -CGCGGuaGUAGCuauaCCgGGUGgAG- -5'
30924 5' -54.3 NC_006552.1 + 33991 0.68 0.690553
Target:  5'- aCGCCGUgGUCGGUGuacuccaagccauUGGU-CGCCUCg -3'
miRNA:   3'- cGCGGUAgUAGCUAU-------------ACCGgGUGGAG- -5'
30924 5' -54.3 NC_006552.1 + 21060 0.68 0.680759
Target:  5'- -gGCCAgcaggUCGUCGAUAUucaGGCCC-CCa- -3'
miRNA:   3'- cgCGGU-----AGUAGCUAUA---CCGGGuGGag -5'
30924 5' -54.3 NC_006552.1 + 52280 0.69 0.647885
Target:  5'- gGCGUgAUCGUCGAaaaGGCCC-CCg- -3'
miRNA:   3'- -CGCGgUAGUAGCUauaCCGGGuGGag -5'
30924 5' -54.3 NC_006552.1 + 26116 0.69 0.647885
Target:  5'- aGCGCuCAUCGUgcaGGUGguaGGCCaggGCCUCg -3'
miRNA:   3'- -CGCG-GUAGUAg--CUAUa--CCGGg--UGGAG- -5'
30924 5' -54.3 NC_006552.1 + 48604 0.69 0.625879
Target:  5'- cGUGaCCGUCGUCGAgaacagaGGCggccagauCCGCCUCg -3'
miRNA:   3'- -CGC-GGUAGUAGCUaua----CCG--------GGUGGAG- -5'
30924 5' -54.3 NC_006552.1 + 28252 0.7 0.560285
Target:  5'- uGCGCgGaUCGcCGAacaggucuuUGUGcGCCCACCUCg -3'
miRNA:   3'- -CGCGgU-AGUaGCU---------AUAC-CGGGUGGAG- -5'
30924 5' -54.3 NC_006552.1 + 7341 0.7 0.549507
Target:  5'- uGCGCCAUCuGUCGugcu-GCCCGCCcCa -3'
miRNA:   3'- -CGCGGUAG-UAGCuauacCGGGUGGaG- -5'
30924 5' -54.3 NC_006552.1 + 14130 0.71 0.528153
Target:  5'- gGCGCCGUCAUgUGA-GUGcGCUCGCuCUCg -3'
miRNA:   3'- -CGCGGUAGUA-GCUaUAC-CGGGUG-GAG- -5'
30924 5' -54.3 NC_006552.1 + 26570 0.72 0.456207
Target:  5'- cGCGCCAUCGUaGGUGaagauGCCCGCCg- -3'
miRNA:   3'- -CGCGGUAGUAgCUAUac---CGGGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.