miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30926 3' -63 NC_006552.1 + 33572 0.66 0.37601
Target:  5'- cAGCGCcgaaauacgcGGCgUCCUGCGGAuaggucgcgUCGUCCAc -3'
miRNA:   3'- -UCGCGu---------CUGgGGGACGCCU---------AGCGGGU- -5'
30926 3' -63 NC_006552.1 + 32009 0.66 0.351586
Target:  5'- uGCGCGGugUCCUUGuCGGccagCGCCa- -3'
miRNA:   3'- uCGCGUCugGGGGAC-GCCua--GCGGgu -5'
30926 3' -63 NC_006552.1 + 8151 0.67 0.320063
Target:  5'- cGCGCAGuaucgcgGCCCCCuccUGCGcAUCGgCCGc -3'
miRNA:   3'- uCGCGUC-------UGGGGG---ACGCcUAGCgGGU- -5'
30926 3' -63 NC_006552.1 + 40013 0.67 0.306189
Target:  5'- cGGCGCGGuugaACUUCUUGCGGua-GCCCu -3'
miRNA:   3'- -UCGCGUC----UGGGGGACGCCuagCGGGu -5'
30926 3' -63 NC_006552.1 + 22956 0.67 0.304041
Target:  5'- cAGCGUgucgacauagaccGGcACCCCauccuuggaugGCGGGUCGCCCc -3'
miRNA:   3'- -UCGCG-------------UC-UGGGGga---------CGCCUAGCGGGu -5'
30926 3' -63 NC_006552.1 + 45847 0.67 0.29978
Target:  5'- gGGCGUAGAaaucaCCUGCGGGcgucugaaccaggcgCGCCCAa -3'
miRNA:   3'- -UCGCGUCUggg--GGACGCCUa--------------GCGGGU- -5'
30926 3' -63 NC_006552.1 + 7242 0.67 0.299074
Target:  5'- uGCGCcaucaacugguGGACCUCCUGCGGGgacaccacCCCAu -3'
miRNA:   3'- uCGCG-----------UCUGGGGGACGCCUagc-----GGGU- -5'
30926 3' -63 NC_006552.1 + 9392 0.69 0.240759
Target:  5'- cGCGCAcgucGCCCCgUGCGGcgCGCUUc -3'
miRNA:   3'- uCGCGUc---UGGGGgACGCCuaGCGGGu -5'
30926 3' -63 NC_006552.1 + 21436 0.7 0.202223
Target:  5'- cGCGCAGGCCCCg-GCcGAacuugaagCGCCCAu -3'
miRNA:   3'- uCGCGUCUGGGGgaCGcCUa-------GCGGGU- -5'
30926 3' -63 NC_006552.1 + 25491 0.71 0.173568
Target:  5'- uGCGcCAGGCCCUCgGUGGGaaucagguugUCGCCCu -3'
miRNA:   3'- uCGC-GUCUGGGGGaCGCCU----------AGCGGGu -5'
30926 3' -63 NC_006552.1 + 22543 0.72 0.152512
Target:  5'- gAGCGCGGuauGCCCCCagcgGCGGcgCaGUCCAu -3'
miRNA:   3'- -UCGCGUC---UGGGGGa---CGCCuaG-CGGGU- -5'
30926 3' -63 NC_006552.1 + 56627 0.73 0.123611
Target:  5'- cGGCGCGGcuucuguCCUgCUGCGGAagGCCCGc -3'
miRNA:   3'- -UCGCGUCu------GGGgGACGCCUagCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.