miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30927 5' -55.8 NC_006552.1 + 18565 0.67 0.617612
Target:  5'- gGAGaaCCGAGuCGGUUCGCCAgccAGGc- -3'
miRNA:   3'- aCUCggGGCUC-GUCAAGCGGU---UCUac -5'
30927 5' -55.8 NC_006552.1 + 23605 0.68 0.606678
Target:  5'- -cAGCCCUGAGCGGUcaGCuCGGGAa- -3'
miRNA:   3'- acUCGGGGCUCGUCAagCG-GUUCUac -5'
30927 5' -55.8 NC_006552.1 + 26258 0.66 0.725997
Target:  5'- -cAGCUCCG-GUAGcgUCGgCAGGAUGa -3'
miRNA:   3'- acUCGGGGCuCGUCa-AGCgGUUCUAC- -5'
30927 5' -55.8 NC_006552.1 + 26851 0.67 0.650452
Target:  5'- aGAGCCUCGGGCuc-UCGCCGc---- -3'
miRNA:   3'- aCUCGGGGCUCGucaAGCGGUucuac -5'
30927 5' -55.8 NC_006552.1 + 30475 0.69 0.520684
Target:  5'- cGAucGCCUgUGAGUAGUgcguacUCGCCGAGGUGa -3'
miRNA:   3'- aCU--CGGG-GCUCGUCA------AGCGGUUCUAC- -5'
30927 5' -55.8 NC_006552.1 + 42588 0.66 0.715394
Target:  5'- cUGAGCagcaCCCGccaaCAGUUCGCCGAGc-- -3'
miRNA:   3'- -ACUCG----GGGCuc--GUCAAGCGGUUCuac -5'
30927 5' -55.8 NC_006552.1 + 45109 0.66 0.679886
Target:  5'- gGuAGCCCUcAGC-GUUCGCCAgcaacaggccgaggGGAUGg -3'
miRNA:   3'- aC-UCGGGGcUCGuCAAGCGGU--------------UCUAC- -5'
30927 5' -55.8 NC_006552.1 + 48225 0.66 0.68314
Target:  5'- -cGGCCCUGcuaAGCaacccgccccGGUUCGCCGGGAc- -3'
miRNA:   3'- acUCGGGGC---UCG----------UCAAGCGGUUCUac -5'
30927 5' -55.8 NC_006552.1 + 52778 0.68 0.595765
Target:  5'- ---cCCCCGAGCAGaUCGCCGcccAGGc- -3'
miRNA:   3'- acucGGGGCUCGUCaAGCGGU---UCUac -5'
30927 5' -55.8 NC_006552.1 + 60531 0.72 0.375344
Target:  5'- cGAGCCCCGucucggccAGCAccGUUCGCCGGcGAc- -3'
miRNA:   3'- aCUCGGGGC--------UCGU--CAAGCGGUU-CUac -5'
30927 5' -55.8 NC_006552.1 + 62120 0.68 0.563245
Target:  5'- cGAGgCCaagcuGCAGUUgaaCGCCAAGGUGg -3'
miRNA:   3'- aCUCgGGgcu--CGUCAA---GCGGUUCUAC- -5'
30927 5' -55.8 NC_006552.1 + 63740 0.7 0.440825
Target:  5'- cGuGCCCCGAGCAGgacaacaugaccgcCGCCAAuAUGc -3'
miRNA:   3'- aCuCGGGGCUCGUCaa------------GCGGUUcUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.