miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30928 3' -54.6 NC_006552.1 + 47660 0.66 0.813027
Target:  5'- uGGCCggcugUCGggaucUCAggucccccgagaaaGCAUucGCCCAGCCGGa -3'
miRNA:   3'- -UCGGa----AGC-----AGU--------------UGUAc-UGGGUCGGCC- -5'
30928 3' -54.6 NC_006552.1 + 3192 0.66 0.806477
Target:  5'- gGGCUUUCGcagaUCGACAcuuccacugccUGGCCCucuuugggcucGGCUGGa -3'
miRNA:   3'- -UCGGAAGC----AGUUGU-----------ACUGGG-----------UCGGCC- -5'
30928 3' -54.6 NC_006552.1 + 41337 0.66 0.787291
Target:  5'- gGGCCgaucuugUCGUCGcccuugauCAUGAUCuuguacaggCAGCCGGa -3'
miRNA:   3'- -UCGGa------AGCAGUu-------GUACUGG---------GUCGGCC- -5'
30928 3' -54.6 NC_006552.1 + 8485 0.67 0.767472
Target:  5'- cGCCUucUCGUCGgccgucagacGCAUGgcgcGCUCAGCCa- -3'
miRNA:   3'- uCGGA--AGCAGU----------UGUAC----UGGGUCGGcc -5'
30928 3' -54.6 NC_006552.1 + 30648 0.67 0.736747
Target:  5'- gAGCCUUggaaGUCGGCc--ACCCAGgCGGu -3'
miRNA:   3'- -UCGGAAg---CAGUUGuacUGGGUCgGCC- -5'
30928 3' -54.6 NC_006552.1 + 52625 0.67 0.73048
Target:  5'- cGGUCggCGUgGaaugcgaauacaggcACAUGAUCUGGCCGGa -3'
miRNA:   3'- -UCGGaaGCAgU---------------UGUACUGGGUCGGCC- -5'
30928 3' -54.6 NC_006552.1 + 9731 0.67 0.726283
Target:  5'- uGGCgcgaUUCaUCAGCAUGGCgCCGGCCu- -3'
miRNA:   3'- -UCGg---AAGcAGUUGUACUG-GGUCGGcc -5'
30928 3' -54.6 NC_006552.1 + 63302 0.67 0.726283
Target:  5'- uGCCaUUuacUGUCGGCAggaACUCAGCCGGu -3'
miRNA:   3'- uCGG-AA---GCAGUUGUac-UGGGUCGGCC- -5'
30928 3' -54.6 NC_006552.1 + 33095 0.68 0.709355
Target:  5'- cGUCUUCGccUCGAaguccuugacaucgcCAUgGACCCAGCCGu -3'
miRNA:   3'- uCGGAAGC--AGUU---------------GUA-CUGGGUCGGCc -5'
30928 3' -54.6 NC_006552.1 + 44762 0.71 0.532318
Target:  5'- gGGCCgacCGUCGGCG-GACUCGacauGCCGGa -3'
miRNA:   3'- -UCGGaa-GCAGUUGUaCUGGGU----CGGCC- -5'
30928 3' -54.6 NC_006552.1 + 11253 0.71 0.509335
Target:  5'- cGGUCUgcucgcggaucgCGUCGGCcaauAUGGCCCAuGCCGGc -3'
miRNA:   3'- -UCGGAa-----------GCAGUUG----UACUGGGU-CGGCC- -5'
30928 3' -54.6 NC_006552.1 + 16034 0.72 0.441237
Target:  5'- cGGCCUgCG-CAGCAgcaccagaaagUGGCCCaguAGCCGGg -3'
miRNA:   3'- -UCGGAaGCaGUUGU-----------ACUGGG---UCGGCC- -5'
30928 3' -54.6 NC_006552.1 + 11028 0.74 0.35127
Target:  5'- cGCCUUCGcUCAugAUGGCaaCCAGgCGGc -3'
miRNA:   3'- uCGGAAGC-AGUugUACUG--GGUCgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.