miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30929 3' -52.5 NC_006552.1 + 25369 0.69 0.65396
Target:  5'- -uCUCCGAGGCCaccgcGGCGAAGUuaGCa- -3'
miRNA:   3'- auGAGGUUCCGG-----UCGUUUUAcgCGac -5'
30929 3' -52.5 NC_006552.1 + 32653 0.69 0.687948
Target:  5'- cGCUCCugcuGGGCCuGCuGAGccUGCGCg- -3'
miRNA:   3'- aUGAGGu---UCCGGuCGuUUU--ACGCGac -5'
30929 3' -52.5 NC_006552.1 + 13899 0.68 0.732399
Target:  5'- uUGCUCCAcGGCCgccugcugAGCAucGGUGCGUg- -3'
miRNA:   3'- -AUGAGGUuCCGG--------UCGUu-UUACGCGac -5'
30929 3' -52.5 NC_006552.1 + 18042 0.68 0.751889
Target:  5'- aUAC-CCAcaucaggcguucGGGCCAGCAGGuucuccacugcGCGCUGg -3'
miRNA:   3'- -AUGaGGU------------UCCGGUCGUUUua---------CGCGAC- -5'
30929 3' -52.5 NC_006552.1 + 62658 0.68 0.75296
Target:  5'- cACcCCGAGGCCuucaccaagauccAGCAg---GCGCUGg -3'
miRNA:   3'- aUGaGGUUCCGG-------------UCGUuuuaCGCGAC- -5'
30929 3' -52.5 NC_006552.1 + 15617 0.67 0.795589
Target:  5'- aGCUCaacccGGCCAGCGGcguucuGGUgGCGCUGc -3'
miRNA:   3'- aUGAGguu--CCGGUCGUU------UUA-CGCGAC- -5'
30929 3' -52.5 NC_006552.1 + 41535 0.67 0.795589
Target:  5'- cUGCUaCCAcucGCCGGCAuAGUGUGCUc -3'
miRNA:   3'- -AUGA-GGUuc-CGGUCGUuUUACGCGAc -5'
30929 3' -52.5 NC_006552.1 + 19582 0.66 0.84063
Target:  5'- cUGCcCCAGGGCCuucgccgccuccagAGCGAucUGCGCc- -3'
miRNA:   3'- -AUGaGGUUCCGG--------------UCGUUuuACGCGac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.