miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30929 5' -54.7 NC_006552.1 + 34297 0.66 0.740957
Target:  5'- aUCGGCuucGGCAUCUUGAUGAUg----- -3'
miRNA:   3'- cAGCCG---CCGUGGAACUACUGgaaguu -5'
30929 5' -54.7 NC_006552.1 + 36157 0.66 0.730329
Target:  5'- aUCGGCGGCAUCggcGcUGGCCU-CGc -3'
miRNA:   3'- cAGCCGCCGUGGaa-CuACUGGAaGUu -5'
30929 5' -54.7 NC_006552.1 + 12188 0.67 0.708783
Target:  5'- -gUGGCGGCcaguGCCUUGucgGACCgcgCAGa -3'
miRNA:   3'- caGCCGCCG----UGGAACua-CUGGaa-GUU- -5'
30929 5' -54.7 NC_006552.1 + 12331 0.68 0.653776
Target:  5'- cUCGGCGGCGCCc---UGACUgcggUCAu -3'
miRNA:   3'- cAGCCGCCGUGGaacuACUGGa---AGUu -5'
30929 5' -54.7 NC_006552.1 + 28611 0.68 0.631554
Target:  5'- aUCGGCGGCGgUUcGAUG-CCUUCc- -3'
miRNA:   3'- cAGCCGCCGUgGAaCUACuGGAAGuu -5'
30929 5' -54.7 NC_006552.1 + 20952 0.68 0.631554
Target:  5'- -cCGGgcgucCGGCACCggGAUGGCCgUCAu -3'
miRNA:   3'- caGCC-----GCCGUGGaaCUACUGGaAGUu -5'
30929 5' -54.7 NC_006552.1 + 38121 0.69 0.587192
Target:  5'- -gCGGCGGCAugcUCUUGAcGGCCU-CAGa -3'
miRNA:   3'- caGCCGCCGU---GGAACUaCUGGAaGUU- -5'
30929 5' -54.7 NC_006552.1 + 44101 0.69 0.576175
Target:  5'- cUUGGcCGGCGCCUggguUGAUaGugCUUCAGc -3'
miRNA:   3'- cAGCC-GCCGUGGA----ACUA-CugGAAGUU- -5'
30929 5' -54.7 NC_006552.1 + 12892 0.69 0.565204
Target:  5'- cUCGGCGGCgugcGCCUUGAUG-UCgucgUCGGu -3'
miRNA:   3'- cAGCCGCCG----UGGAACUACuGGa---AGUU- -5'
30929 5' -54.7 NC_006552.1 + 34662 0.69 0.543437
Target:  5'- cUUGGuCGGCGCCUUGAcgcgguUGACCagCAu -3'
miRNA:   3'- cAGCC-GCCGUGGAACU------ACUGGaaGUu -5'
30929 5' -54.7 NC_006552.1 + 26530 0.72 0.420477
Target:  5'- -gCGGCGGCGCCggGGUGuCCagcgUCAGg -3'
miRNA:   3'- caGCCGCCGUGGaaCUACuGGa---AGUU- -5'
30929 5' -54.7 NC_006552.1 + 42999 0.72 0.392415
Target:  5'- gGUCGGCGGCgACCUUGG---UCUUCAc -3'
miRNA:   3'- -CAGCCGCCG-UGGAACUacuGGAAGUu -5'
30929 5' -54.7 NC_006552.1 + 31402 0.82 0.09833
Target:  5'- cGUCGGCGGCGCCgccagUGGUGGUCUUCGc -3'
miRNA:   3'- -CAGCCGCCGUGGa----ACUACUGGAAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.