miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30931 3' -61.1 NC_006552.1 + 18895 0.66 0.45553
Target:  5'- gAGCcuGCUGCUCgGCAUCGAuguuGGCCugggCCu -3'
miRNA:   3'- -UCG--CGACGGG-CGUAGCU----CCGGua--GGc -5'
30931 3' -61.1 NC_006552.1 + 7627 0.66 0.417621
Target:  5'- cGGCGguUUGCCgCGCAUuggaguauacgaaCGAGGCCAguacCCGc -3'
miRNA:   3'- -UCGC--GACGG-GCGUA-------------GCUCCGGUa---GGC- -5'
30931 3' -61.1 NC_006552.1 + 24707 0.67 0.400718
Target:  5'- aAGCGCcGCUuuCGgGUCGuAGGCCAccagCCGg -3'
miRNA:   3'- -UCGCGaCGG--GCgUAGC-UCCGGUa---GGC- -5'
30931 3' -61.1 NC_006552.1 + 7897 0.67 0.400718
Target:  5'- uGGCGCcaggaaacgcGCCaCGCAUCugcucGGCCAUCUGg -3'
miRNA:   3'- -UCGCGa---------CGG-GCGUAGcu---CCGGUAGGC- -5'
30931 3' -61.1 NC_006552.1 + 17157 0.67 0.391998
Target:  5'- cGCGCaUGCCCG-AUC-AGGCCucuUCCc -3'
miRNA:   3'- uCGCG-ACGGGCgUAGcUCCGGu--AGGc -5'
30931 3' -61.1 NC_006552.1 + 11701 0.67 0.391133
Target:  5'- uGCGguuCUGCCCGCGUuucaccggaagcaCGAuGGCCuugCCGg -3'
miRNA:   3'- uCGC---GACGGGCGUA-------------GCU-CCGGua-GGC- -5'
30931 3' -61.1 NC_006552.1 + 21518 0.67 0.383403
Target:  5'- uGCGCUGCCgcuuUGCGUgGuGGUCAcgUCCa -3'
miRNA:   3'- uCGCGACGG----GCGUAgCuCCGGU--AGGc -5'
30931 3' -61.1 NC_006552.1 + 21413 0.67 0.374933
Target:  5'- aAGCGUgaacgugaagUGCCUGCcgCGcAGGCCccggCCGa -3'
miRNA:   3'- -UCGCG----------ACGGGCGuaGC-UCCGGua--GGC- -5'
30931 3' -61.1 NC_006552.1 + 12212 0.67 0.374933
Target:  5'- cGCGCagagGCCUcaGCG-CGGgcGGCCAUCCGc -3'
miRNA:   3'- uCGCGa---CGGG--CGUaGCU--CCGGUAGGC- -5'
30931 3' -61.1 NC_006552.1 + 12280 0.68 0.358379
Target:  5'- cAGCGCUucaucgGCCCGCucGUUGAgGGCCugagCCa -3'
miRNA:   3'- -UCGCGA------CGGGCG--UAGCU-CCGGua--GGc -5'
30931 3' -61.1 NC_006552.1 + 30432 0.68 0.342343
Target:  5'- aGGCGCaGCCCGCAguugaUCGAguaguaccGGCUAacUCCu -3'
miRNA:   3'- -UCGCGaCGGGCGU-----AGCU--------CCGGU--AGGc -5'
30931 3' -61.1 NC_006552.1 + 12848 0.68 0.334521
Target:  5'- uGCGCUGCCCGg--CG-GGCCuggauuUCCu -3'
miRNA:   3'- uCGCGACGGGCguaGCuCCGGu-----AGGc -5'
30931 3' -61.1 NC_006552.1 + 44466 0.68 0.319272
Target:  5'- uGCGCUGCCgGCGcCGgcagacgccccAGGCguUCCGc -3'
miRNA:   3'- uCGCGACGGgCGUaGC-----------UCCGguAGGC- -5'
30931 3' -61.1 NC_006552.1 + 48677 0.69 0.311846
Target:  5'- cGCGCcgagaucuacGCCCGgGUUGGcGCCGUCCGg -3'
miRNA:   3'- uCGCGa---------CGGGCgUAGCUcCGGUAGGC- -5'
30931 3' -61.1 NC_006552.1 + 39283 0.69 0.276687
Target:  5'- cAGCGCUGCCggCGCAggaagCGgcAGGCC-UCCc -3'
miRNA:   3'- -UCGCGACGG--GCGUa----GC--UCCGGuAGGc -5'
30931 3' -61.1 NC_006552.1 + 17971 0.7 0.257152
Target:  5'- cGGCGUUGUacugagccaaCGCGUcCGGGGCCAUCgGc -3'
miRNA:   3'- -UCGCGACGg---------GCGUA-GCUCCGGUAGgC- -5'
30931 3' -61.1 NC_006552.1 + 37034 0.7 0.257152
Target:  5'- cGCGCUGCCaccgcuaGCGUCcugaGAGGCCGgaaCGu -3'
miRNA:   3'- uCGCGACGGg------CGUAG----CUCCGGUag-GC- -5'
30931 3' -61.1 NC_006552.1 + 21168 0.7 0.250896
Target:  5'- aGGCGCauccGgCCGCGUCGGugccGGCaCAUCCGc -3'
miRNA:   3'- -UCGCGa---CgGGCGUAGCU----CCG-GUAGGC- -5'
30931 3' -61.1 NC_006552.1 + 13925 0.7 0.248429
Target:  5'- cGGUGCgugccacgacagcGCCCGCGUCGcGGGCCAcgUCGa -3'
miRNA:   3'- -UCGCGa------------CGGGCGUAGC-UCCGGUa-GGC- -5'
30931 3' -61.1 NC_006552.1 + 12946 0.72 0.190114
Target:  5'- cAGCGCgcugGCCUuggccuggcgguGCGuUCGAGGCCAgcagCCGa -3'
miRNA:   3'- -UCGCGa---CGGG------------CGU-AGCUCCGGUa---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.