miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30931 5' -54.1 NC_006552.1 + 50162 0.69 0.63825
Target:  5'- --gGAGCAGgCGU-ACUGCGcGCUGGu -3'
miRNA:   3'- cagCUUGUCgGCAuUGGCGCaCGACC- -5'
30931 5' -54.1 NC_006552.1 + 41016 0.66 0.823458
Target:  5'- -gCGAACAGCaGUucauCCGCGUugGCUGcGg -3'
miRNA:   3'- caGCUUGUCGgCAuu--GGCGCA--CGAC-C- -5'
30931 5' -54.1 NC_006552.1 + 38154 0.72 0.488942
Target:  5'- cGUUGAGCugcuGGCCGcggUAGCUGUugGUGCUGGg -3'
miRNA:   3'- -CAGCUUG----UCGGC---AUUGGCG--CACGACC- -5'
30931 5' -54.1 NC_006552.1 + 35870 0.68 0.724481
Target:  5'- cGUCGGggccucGCcuGCCGUGGCgCGCGcUGCUGc -3'
miRNA:   3'- -CAGCU------UGu-CGGCAUUG-GCGC-ACGACc -5'
30931 5' -54.1 NC_006552.1 + 29444 0.68 0.691445
Target:  5'- uUCGAAUugaAGCCGUAgGCCGaaacgaaCGUGCUGu -3'
miRNA:   3'- cAGCUUG---UCGGCAU-UGGC-------GCACGACc -5'
30931 5' -54.1 NC_006552.1 + 26270 0.66 0.841212
Target:  5'- cGUCG-GCAGgaugaCCGUGGCCGCGcccaGCgGGu -3'
miRNA:   3'- -CAGCuUGUC-----GGCAUUGGCGCa---CGaCC- -5'
30931 5' -54.1 NC_006552.1 + 23527 0.68 0.724481
Target:  5'- -aCGuAGCAGCCGaauaUAACCGUGUcGCacUGGa -3'
miRNA:   3'- caGC-UUGUCGGC----AUUGGCGCA-CG--ACC- -5'
30931 5' -54.1 NC_006552.1 + 15259 0.66 0.832438
Target:  5'- cGUCGu-CuGCCGU--CCGC-UGCUGGu -3'
miRNA:   3'- -CAGCuuGuCGGCAuuGGCGcACGACC- -5'
30931 5' -54.1 NC_006552.1 + 11956 0.66 0.832438
Target:  5'- gGUCGGAgcGCa-UGGCgGUGUGCUGGg -3'
miRNA:   3'- -CAGCUUguCGgcAUUGgCGCACGACC- -5'
30931 5' -54.1 NC_006552.1 + 7534 0.72 0.499166
Target:  5'- aGUCGGcCAGCCGU-ACCGCG-GCg-- -3'
miRNA:   3'- -CAGCUuGUCGGCAuUGGCGCaCGacc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.