miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30932 3' -56.9 NC_006552.1 + 2056 0.66 0.67409
Target:  5'- gCUUGagcgCGCCGGCGucgugcgcggccuGCUgaucgaacucgacGCCGGCGGc -3'
miRNA:   3'- -GAACga--GCGGCCGU-------------UGA-------------UGGCCGUCc -5'
30932 3' -56.9 NC_006552.1 + 3323 0.66 0.64406
Target:  5'- -gUGCUUGCCGG-AACUGCCGa---- -3'
miRNA:   3'- gaACGAGCGGCCgUUGAUGGCcgucc -5'
30932 3' -56.9 NC_006552.1 + 3576 0.75 0.21289
Target:  5'- -gUGCUgGCCGaGCcGCcggcGCCGGCAGGa -3'
miRNA:   3'- gaACGAgCGGC-CGuUGa---UGGCCGUCC- -5'
30932 3' -56.9 NC_006552.1 + 5267 0.69 0.476381
Target:  5'- --cGCcUGCCGGUAGUUGCCGGCGa- -3'
miRNA:   3'- gaaCGaGCGGCCGUUGAUGGCCGUcc -5'
30932 3' -56.9 NC_006552.1 + 5443 0.69 0.476381
Target:  5'- gUUGUUCGCCGcGCuGGCgggugAUCGGCGGa -3'
miRNA:   3'- gAACGAGCGGC-CG-UUGa----UGGCCGUCc -5'
30932 3' -56.9 NC_006552.1 + 10834 0.67 0.596781
Target:  5'- gUUGUUCGCCgggcugcGGCGcugccgacucuucgGCUGCCGGCu-- -3'
miRNA:   3'- gAACGAGCGG-------CCGU--------------UGAUGGCCGucc -5'
30932 3' -56.9 NC_006552.1 + 11257 0.66 0.686882
Target:  5'- -cUGCUCGCggaucgcguCGGcCAAUauggcccaUGCCGGCGGa -3'
miRNA:   3'- gaACGAGCG---------GCC-GUUG--------AUGGCCGUCc -5'
30932 3' -56.9 NC_006552.1 + 12823 0.66 0.680494
Target:  5'- -cUGCggGuuGGCGacagccuucugcugcGCUGcCCGGCGGGc -3'
miRNA:   3'- gaACGagCggCCGU---------------UGAU-GGCCGUCC- -5'
30932 3' -56.9 NC_006552.1 + 14869 0.72 0.357497
Target:  5'- --gGCUCGCCaGguGCUGCCGGaucGGc -3'
miRNA:   3'- gaaCGAGCGGcCguUGAUGGCCgu-CC- -5'
30932 3' -56.9 NC_006552.1 + 15838 0.67 0.590361
Target:  5'- --gGCUUGCCGGCGAacaaauuCCaGGCGGc -3'
miRNA:   3'- gaaCGAGCGGCCGUUgau----GG-CCGUCc -5'
30932 3' -56.9 NC_006552.1 + 24264 0.84 0.052451
Target:  5'- -gUGgUCGCCGGC-ACUACCGGCAGcGg -3'
miRNA:   3'- gaACgAGCGGCCGuUGAUGGCCGUC-C- -5'
30932 3' -56.9 NC_006552.1 + 26207 0.66 0.665531
Target:  5'- -gUGCUUGCCGGuCGGC-AUgGGCgacAGGu -3'
miRNA:   3'- gaACGAGCGGCC-GUUGaUGgCCG---UCC- -5'
30932 3' -56.9 NC_006552.1 + 30901 0.67 0.590361
Target:  5'- -cUGCU-GCUGGCAGCgguCgGGCGGa -3'
miRNA:   3'- gaACGAgCGGCCGUUGau-GgCCGUCc -5'
30932 3' -56.9 NC_006552.1 + 32138 0.68 0.579688
Target:  5'- --gGCUUGCCGGUgcauGCgcgccauuCCGGCAGc -3'
miRNA:   3'- gaaCGAGCGGCCGu---UGau------GGCCGUCc -5'
30932 3' -56.9 NC_006552.1 + 32695 0.69 0.496393
Target:  5'- -gUGUcgUCGCCGGcCGGCgcgggGCCGGUGGa -3'
miRNA:   3'- gaACG--AGCGGCC-GUUGa----UGGCCGUCc -5'
30932 3' -56.9 NC_006552.1 + 33683 0.73 0.310089
Target:  5'- gUUGCagGUcuuCGGCGACgaaGCCGGCGGGc -3'
miRNA:   3'- gAACGagCG---GCCGUUGa--UGGCCGUCC- -5'
30932 3' -56.9 NC_006552.1 + 35103 0.7 0.418924
Target:  5'- -gUGC-CGCuCGGCAucUUGCCGGuCAGGc -3'
miRNA:   3'- gaACGaGCG-GCCGUu-GAUGGCC-GUCC- -5'
30932 3' -56.9 NC_006552.1 + 35608 0.67 0.601067
Target:  5'- cCUUGCUCuccgcaauggaGUCGGCGu---CCGGguGGg -3'
miRNA:   3'- -GAACGAG-----------CGGCCGUugauGGCCguCC- -5'
30932 3' -56.9 NC_006552.1 + 38161 0.67 0.590361
Target:  5'- -cUGCUgGCCgcGGUAGCUGuuGGUgcuGGGa -3'
miRNA:   3'- gaACGAgCGG--CCGUUGAUggCCG---UCC- -5'
30932 3' -56.9 NC_006552.1 + 39286 0.66 0.665531
Target:  5'- --cGCU-GCCGGCGcaGgaAgCGGCAGGc -3'
miRNA:   3'- gaaCGAgCGGCCGU--UgaUgGCCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.