miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30932 3' -56.9 NC_006552.1 + 59674 0.68 0.537486
Target:  5'- -cUGcCUCGCCGGcCAACggcggugAUCGGCAa- -3'
miRNA:   3'- gaAC-GAGCGGCC-GUUGa------UGGCCGUcc -5'
30932 3' -56.9 NC_006552.1 + 41971 0.69 0.496393
Target:  5'- -gUGCUCgaaGCCguGGCAG-UACCGGCAGc -3'
miRNA:   3'- gaACGAG---CGG--CCGUUgAUGGCCGUCc -5'
30932 3' -56.9 NC_006552.1 + 32695 0.69 0.496393
Target:  5'- -gUGUcgUCGCCGGcCGGCgcgggGCCGGUGGa -3'
miRNA:   3'- gaACG--AGCGGCC-GUUGa----UGGCCGUCc -5'
30932 3' -56.9 NC_006552.1 + 62969 0.69 0.486339
Target:  5'- ---aCUgGCCGGCGccguucuuCUGCCGGCGGa -3'
miRNA:   3'- gaacGAgCGGCCGUu-------GAUGGCCGUCc -5'
30932 3' -56.9 NC_006552.1 + 5443 0.69 0.476381
Target:  5'- gUUGUUCGCCGcGCuGGCgggugAUCGGCGGa -3'
miRNA:   3'- gAACGAGCGGC-CG-UUGa----UGGCCGUCc -5'
30932 3' -56.9 NC_006552.1 + 5267 0.69 0.476381
Target:  5'- --cGCcUGCCGGUAGUUGCCGGCGa- -3'
miRNA:   3'- gaaCGaGCGGCCGUUGAUGGCCGUcc -5'
30932 3' -56.9 NC_006552.1 + 48461 0.7 0.456778
Target:  5'- --gGCUCGCUGGCGugU-CCGGUu-- -3'
miRNA:   3'- gaaCGAGCGGCCGUugAuGGCCGucc -5'
30932 3' -56.9 NC_006552.1 + 45246 0.7 0.452909
Target:  5'- --aGCUUGCCGGCAACcgaugcguuccaaACCGGCc-- -3'
miRNA:   3'- gaaCGAGCGGCCGUUGa------------UGGCCGucc -5'
30932 3' -56.9 NC_006552.1 + 64489 0.7 0.44714
Target:  5'- --cGCaCGCUGGCGGC--CUGGCAGGc -3'
miRNA:   3'- gaaCGaGCGGCCGUUGauGGCCGUCC- -5'
30932 3' -56.9 NC_006552.1 + 35103 0.7 0.418924
Target:  5'- -gUGC-CGCuCGGCAucUUGCCGGuCAGGc -3'
miRNA:   3'- gaACGaGCG-GCCGUu-GAUGGCC-GUCC- -5'
30932 3' -56.9 NC_006552.1 + 53967 0.71 0.365876
Target:  5'- -cUGCUCGgCGGCAAgcCUGagcaGGCAGGc -3'
miRNA:   3'- gaACGAGCgGCCGUU--GAUgg--CCGUCC- -5'
30932 3' -56.9 NC_006552.1 + 14869 0.72 0.357497
Target:  5'- --gGCUCGCCaGguGCUGCCGGaucGGc -3'
miRNA:   3'- gaaCGAGCGGcCguUGAUGGCCgu-CC- -5'
30932 3' -56.9 NC_006552.1 + 52209 0.72 0.325342
Target:  5'- aCUUGCUCGUCGuCGACcaGCCGGCccuGGa -3'
miRNA:   3'- -GAACGAGCGGCcGUUGa-UGGCCGu--CC- -5'
30932 3' -56.9 NC_006552.1 + 33683 0.73 0.310089
Target:  5'- gUUGCagGUcuuCGGCGACgaaGCCGGCGGGc -3'
miRNA:   3'- gAACGagCG---GCCGUUGa--UGGCCGUCC- -5'
30932 3' -56.9 NC_006552.1 + 52003 0.75 0.229978
Target:  5'- gCUUGCcgcggcgCGCCaGCAACUcGCCGaGCAGGa -3'
miRNA:   3'- -GAACGa------GCGGcCGUUGA-UGGC-CGUCC- -5'
30932 3' -56.9 NC_006552.1 + 3576 0.75 0.21289
Target:  5'- -gUGCUgGCCGaGCcGCcggcGCCGGCAGGa -3'
miRNA:   3'- gaACGAgCGGC-CGuUGa---UGGCCGUCC- -5'
30932 3' -56.9 NC_006552.1 + 60553 0.8 0.108848
Target:  5'- --cGUUCGCCGGCGACUcGCC-GCAGGc -3'
miRNA:   3'- gaaCGAGCGGCCGUUGA-UGGcCGUCC- -5'
30932 3' -56.9 NC_006552.1 + 24264 0.84 0.052451
Target:  5'- -gUGgUCGCCGGC-ACUACCGGCAGcGg -3'
miRNA:   3'- gaACgAGCGGCCGuUGAUGGCCGUC-C- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.