miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30933 5' -56 NC_006552.1 + 20488 0.66 0.733438
Target:  5'- ---gUGGcCGCUUGcACCAGGAUGUCGc -3'
miRNA:   3'- gauaGCC-GUGGACaUGGUCCUGCGGU- -5'
30933 5' -56 NC_006552.1 + 63772 0.66 0.722974
Target:  5'- -aAUauGCGCCagGUcGCCGcGGACGCCAu -3'
miRNA:   3'- gaUAgcCGUGGa-CA-UGGU-CCUGCGGU- -5'
30933 5' -56 NC_006552.1 + 24570 0.66 0.712422
Target:  5'- ---aUGGCACCgcUGUACCAagucGGGCGUUg -3'
miRNA:   3'- gauaGCCGUGG--ACAUGGU----CCUGCGGu -5'
30933 5' -56 NC_006552.1 + 64281 0.66 0.700726
Target:  5'- ---aCGGCGCgCUGUucugucACCAcugcggcGGACGCCu -3'
miRNA:   3'- gauaGCCGUG-GACA------UGGU-------CCUGCGGu -5'
30933 5' -56 NC_006552.1 + 37961 0.66 0.691098
Target:  5'- ---cCGGC-CUUG-GCCAGGGCGUCu -3'
miRNA:   3'- gauaGCCGuGGACaUGGUCCUGCGGu -5'
30933 5' -56 NC_006552.1 + 24785 0.67 0.658722
Target:  5'- -gGUCaGCACCUGgGCgCGGGugaugACGCCGg -3'
miRNA:   3'- gaUAGcCGUGGACaUG-GUCC-----UGCGGU- -5'
30933 5' -56 NC_006552.1 + 32974 0.67 0.634826
Target:  5'- -cGUCGGCGuCCUGgcucccagcguCCGGGAUGUCc -3'
miRNA:   3'- gaUAGCCGU-GGACau---------GGUCCUGCGGu -5'
30933 5' -56 NC_006552.1 + 21843 0.67 0.626128
Target:  5'- ---aCGGCAUCcGaUACCAGGucgcGCGCCGc -3'
miRNA:   3'- gauaGCCGUGGaC-AUGGUCC----UGCGGU- -5'
30933 5' -56 NC_006552.1 + 38446 0.68 0.604409
Target:  5'- -gAUCuGCugCUGUuCCuGGAUGCCGc -3'
miRNA:   3'- gaUAGcCGugGACAuGGuCCUGCGGU- -5'
30933 5' -56 NC_006552.1 + 28156 0.68 0.593579
Target:  5'- ---cCGGCGCC---ACC-GGACGCCAu -3'
miRNA:   3'- gauaGCCGUGGacaUGGuCCUGCGGU- -5'
30933 5' -56 NC_006552.1 + 59939 0.68 0.582782
Target:  5'- gCUGUcCGGCuucuuCCUGUACgCGGaGACGCa- -3'
miRNA:   3'- -GAUA-GCCGu----GGACAUG-GUC-CUGCGgu -5'
30933 5' -56 NC_006552.1 + 2034 0.69 0.550661
Target:  5'- cCUAUCuGCGCCUGggaCAGGcgcuugagcGCGCCGg -3'
miRNA:   3'- -GAUAGcCGUGGACaugGUCC---------UGCGGU- -5'
30933 5' -56 NC_006552.1 + 53667 0.7 0.488284
Target:  5'- -gGUCGGcCAUCUGgGCCAGGAU-CCAg -3'
miRNA:   3'- gaUAGCC-GUGGACaUGGUCCUGcGGU- -5'
30933 5' -56 NC_006552.1 + 48746 0.7 0.478201
Target:  5'- -aAUCGcacGCACCcGgcCCAGGugGCCGu -3'
miRNA:   3'- gaUAGC---CGUGGaCauGGUCCugCGGU- -5'
30933 5' -56 NC_006552.1 + 43993 0.7 0.448593
Target:  5'- gCUGUCGGCgACCaGgGCCAGGcgaaccuCGCCGg -3'
miRNA:   3'- -GAUAGCCG-UGGaCaUGGUCCu------GCGGU- -5'
30933 5' -56 NC_006552.1 + 26511 0.71 0.437993
Target:  5'- ---cCGGCGCCUGccACCAGcagcggcGGCGCCGg -3'
miRNA:   3'- gauaGCCGUGGACa-UGGUC-------CUGCGGU- -5'
30933 5' -56 NC_006552.1 + 37814 0.71 0.401606
Target:  5'- -cAUUGGCAUCUGcgcgAUCuGGGCGCCGg -3'
miRNA:   3'- gaUAGCCGUGGACa---UGGuCCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.