Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30934 | 3' | -52.1 | NC_006552.1 | + | 18679 | 0.66 | 0.900647 |
Target: 5'- uUGccGCUCuGGCUGGGucauuaccuuGUCGCgauggCGCg -3' miRNA: 3'- uGCuaCGAGuCCGACUU----------UAGCGa----GCG- -5' |
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30934 | 3' | -52.1 | NC_006552.1 | + | 2589 | 0.66 | 0.900647 |
Target: 5'- gACGAcGCUacGGCUcGAAGgcgaugCGCUCGUa -3' miRNA: 3'- -UGCUaCGAguCCGA-CUUUa-----GCGAGCG- -5' |
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30934 | 3' | -52.1 | NC_006552.1 | + | 33400 | 0.66 | 0.893535 |
Target: 5'- gGCGgcGCUUAGaCUGcgccGAggCGCUCGCc -3' miRNA: 3'- -UGCuaCGAGUCcGAC----UUuaGCGAGCG- -5' |
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30934 | 3' | -52.1 | NC_006552.1 | + | 5681 | 0.66 | 0.870582 |
Target: 5'- uGCGGgcagcGCUCucGGCUGAu-UCGCggcggUCGCg -3' miRNA: 3'- -UGCUa----CGAGu-CCGACUuuAGCG-----AGCG- -5' |
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30934 | 3' | -52.1 | NC_006552.1 | + | 12519 | 0.67 | 0.862412 |
Target: 5'- cCGAauUGUUCAGGgUGucguAGUC-CUCGCg -3' miRNA: 3'- uGCU--ACGAGUCCgACu---UUAGcGAGCG- -5' |
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30934 | 3' | -52.1 | NC_006552.1 | + | 52848 | 0.67 | 0.853993 |
Target: 5'- uACGuucAUGCUCacgcgcgaacAGGCUGAAcgguuguacgccAUCGCUacCGCa -3' miRNA: 3'- -UGC---UACGAG----------UCCGACUU------------UAGCGA--GCG- -5' |
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30934 | 3' | -52.1 | NC_006552.1 | + | 3231 | 0.67 | 0.836446 |
Target: 5'- uUGG-GCUC-GGCUGGaagGAUCGC-CGCa -3' miRNA: 3'- uGCUaCGAGuCCGACU---UUAGCGaGCG- -5' |
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30934 | 3' | -52.1 | NC_006552.1 | + | 13963 | 0.68 | 0.792855 |
Target: 5'- uCGAUGU--AGGCUGGaacucauccgcaucgGAcuUCGCUCGCu -3' miRNA: 3'- uGCUACGagUCCGACU---------------UU--AGCGAGCG- -5' |
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30934 | 3' | -52.1 | NC_006552.1 | + | 10766 | 0.68 | 0.778812 |
Target: 5'- cGCGGUGCUCAGGgcaUGcAGAUUGg-CGCc -3' miRNA: 3'- -UGCUACGAGUCCg--AC-UUUAGCgaGCG- -5' |
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30934 | 3' | -52.1 | NC_006552.1 | + | 48431 | 0.69 | 0.758225 |
Target: 5'- -aGGUGCUCGGcggacacacuGCUGucGUCugGCUCGCu -3' miRNA: 3'- ugCUACGAGUC----------CGACuuUAG--CGAGCG- -5' |
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30934 | 3' | -52.1 | NC_006552.1 | + | 31842 | 0.71 | 0.626862 |
Target: 5'- gUGAUGCgccgCAGGUcGGAGUCggggcGCUCGCc -3' miRNA: 3'- uGCUACGa---GUCCGaCUUUAG-----CGAGCG- -5' |
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30934 | 3' | -52.1 | NC_006552.1 | + | 40192 | 0.72 | 0.549257 |
Target: 5'- aGCG-UGCUgcGGUUGAAGUCGCUCaaGCg -3' miRNA: 3'- -UGCuACGAguCCGACUUUAGCGAG--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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