miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30934 3' -52.1 NC_006552.1 + 2589 0.66 0.900647
Target:  5'- gACGAcGCUacGGCUcGAAGgcgaugCGCUCGUa -3'
miRNA:   3'- -UGCUaCGAguCCGA-CUUUa-----GCGAGCG- -5'
30934 3' -52.1 NC_006552.1 + 18679 0.66 0.900647
Target:  5'- uUGccGCUCuGGCUGGGucauuaccuuGUCGCgauggCGCg -3'
miRNA:   3'- uGCuaCGAGuCCGACUU----------UAGCGa----GCG- -5'
30934 3' -52.1 NC_006552.1 + 33400 0.66 0.893535
Target:  5'- gGCGgcGCUUAGaCUGcgccGAggCGCUCGCc -3'
miRNA:   3'- -UGCuaCGAGUCcGAC----UUuaGCGAGCG- -5'
30934 3' -52.1 NC_006552.1 + 5681 0.66 0.870582
Target:  5'- uGCGGgcagcGCUCucGGCUGAu-UCGCggcggUCGCg -3'
miRNA:   3'- -UGCUa----CGAGu-CCGACUuuAGCG-----AGCG- -5'
30934 3' -52.1 NC_006552.1 + 12519 0.67 0.862412
Target:  5'- cCGAauUGUUCAGGgUGucguAGUC-CUCGCg -3'
miRNA:   3'- uGCU--ACGAGUCCgACu---UUAGcGAGCG- -5'
30934 3' -52.1 NC_006552.1 + 52848 0.67 0.853993
Target:  5'- uACGuucAUGCUCacgcgcgaacAGGCUGAAcgguuguacgccAUCGCUacCGCa -3'
miRNA:   3'- -UGC---UACGAG----------UCCGACUU------------UAGCGA--GCG- -5'
30934 3' -52.1 NC_006552.1 + 3231 0.67 0.836446
Target:  5'- uUGG-GCUC-GGCUGGaagGAUCGC-CGCa -3'
miRNA:   3'- uGCUaCGAGuCCGACU---UUAGCGaGCG- -5'
30934 3' -52.1 NC_006552.1 + 13963 0.68 0.792855
Target:  5'- uCGAUGU--AGGCUGGaacucauccgcaucgGAcuUCGCUCGCu -3'
miRNA:   3'- uGCUACGagUCCGACU---------------UU--AGCGAGCG- -5'
30934 3' -52.1 NC_006552.1 + 10766 0.68 0.778812
Target:  5'- cGCGGUGCUCAGGgcaUGcAGAUUGg-CGCc -3'
miRNA:   3'- -UGCUACGAGUCCg--AC-UUUAGCgaGCG- -5'
30934 3' -52.1 NC_006552.1 + 48431 0.69 0.758225
Target:  5'- -aGGUGCUCGGcggacacacuGCUGucGUCugGCUCGCu -3'
miRNA:   3'- ugCUACGAGUC----------CGACuuUAG--CGAGCG- -5'
30934 3' -52.1 NC_006552.1 + 31842 0.71 0.626862
Target:  5'- gUGAUGCgccgCAGGUcGGAGUCggggcGCUCGCc -3'
miRNA:   3'- uGCUACGa---GUCCGaCUUUAG-----CGAGCG- -5'
30934 3' -52.1 NC_006552.1 + 40192 0.72 0.549257
Target:  5'- aGCG-UGCUgcGGUUGAAGUCGCUCaaGCg -3'
miRNA:   3'- -UGCuACGAguCCGACUUUAGCGAG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.