miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30935 3' -49.7 NC_006552.1 + 41257 0.66 0.967706
Target:  5'- --gGCGA-CGGauaAACCGCUuCUGCg -3'
miRNA:   3'- gaaCGCUaGCCaugUUGGCGAuGAUG- -5'
30935 3' -49.7 NC_006552.1 + 4116 0.66 0.964157
Target:  5'- gUUGUGGUUGc--CAGCCGCUGCg-- -3'
miRNA:   3'- gAACGCUAGCcauGUUGGCGAUGaug -5'
30935 3' -49.7 NC_006552.1 + 44658 0.67 0.94725
Target:  5'- --aGCGGUgCGGcuaccACAGCCGcCUGCUGg -3'
miRNA:   3'- gaaCGCUA-GCCa----UGUUGGC-GAUGAUg -5'
30935 3' -49.7 NC_006552.1 + 7101 0.67 0.94725
Target:  5'- -aUGCGG-CGGUugAuCUGCU-CUGCg -3'
miRNA:   3'- gaACGCUaGCCAugUuGGCGAuGAUG- -5'
30935 3' -49.7 NC_006552.1 + 15441 0.67 0.937096
Target:  5'- -aUGCuGA-CGGUACGGauuCCGCUGCcgGCg -3'
miRNA:   3'- gaACG-CUaGCCAUGUU---GGCGAUGa-UG- -5'
30935 3' -49.7 NC_006552.1 + 12823 0.68 0.919672
Target:  5'- -cUGCgGGUUGGcgACAGCCuuCUGCUGCg -3'
miRNA:   3'- gaACG-CUAGCCa-UGUUGGc-GAUGAUG- -5'
30935 3' -49.7 NC_006552.1 + 4061 0.68 0.899614
Target:  5'- uUUGCaGAuUCGGUGCuGCCGCcagaccACUACc -3'
miRNA:   3'- gAACG-CU-AGCCAUGuUGGCGa-----UGAUG- -5'
30935 3' -49.7 NC_006552.1 + 28105 0.68 0.897466
Target:  5'- gCUUGCGGUCGGcgaUcuuugccuggccgaACAACUGCauguUACUGCc -3'
miRNA:   3'- -GAACGCUAGCC---A--------------UGUUGGCG----AUGAUG- -5'
30935 3' -49.7 NC_006552.1 + 48305 0.69 0.876996
Target:  5'- --aGCGAaacgccaaccCGGcgGCGACCGUUGCUGCc -3'
miRNA:   3'- gaaCGCUa---------GCCa-UGUUGGCGAUGAUG- -5'
30935 3' -49.7 NC_006552.1 + 35448 0.7 0.84312
Target:  5'- uCUUGCGcguUCGGcUGCuGCUGCgACUGCu -3'
miRNA:   3'- -GAACGCu--AGCC-AUGuUGGCGaUGAUG- -5'
30935 3' -49.7 NC_006552.1 + 39265 0.72 0.754196
Target:  5'- -aUGCGAUCaGGUgACAGCCagcGCUGCcgGCg -3'
miRNA:   3'- gaACGCUAG-CCA-UGUUGG---CGAUGa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.