miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30936 5' -45.2 NC_006552.1 + 7404 0.66 0.998631
Target:  5'- -cUCAGCC-AGGGAaaAGUcacuuggaccggcugGGUCAUGUu -3'
miRNA:   3'- gaAGUUGGuUUCCU--UCAa--------------CCAGUACG- -5'
30936 5' -45.2 NC_006552.1 + 53771 0.67 0.997901
Target:  5'- --cCGGCCAGcagcAGGAgcgcaccgAGUggcaccgGGUCGUGCu -3'
miRNA:   3'- gaaGUUGGUU----UCCU--------UCAa------CCAGUACG- -5'
30936 5' -45.2 NC_006552.1 + 24820 0.67 0.996315
Target:  5'- --aCAGCau-GGGGAuGUUGGUCuGUGCc -3'
miRNA:   3'- gaaGUUGguuUCCUU-CAACCAG-UACG- -5'
30936 5' -45.2 NC_006552.1 + 19668 0.72 0.943111
Target:  5'- uUUCGGCguAAGcGAuGUUGGUCcgGCu -3'
miRNA:   3'- gAAGUUGguUUC-CUuCAACCAGuaCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.