miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30937 3' -60.7 NC_006552.1 + 26447 0.66 0.434528
Target:  5'- cGCCGAcUCCu--GGGGGCCGcGCAGc -3'
miRNA:   3'- uCGGCUcGGGuuuCUCCCGGUcCGUC- -5'
30937 3' -60.7 NC_006552.1 + 54352 0.66 0.443921
Target:  5'- uGGCUGAucugcuGCCgCAAGGAGGagaagauccuGCCuGGCAGc -3'
miRNA:   3'- -UCGGCU------CGG-GUUUCUCC----------CGGuCCGUC- -5'
30937 3' -60.7 NC_006552.1 + 32076 0.66 0.463042
Target:  5'- uGCC-AGCCCGGucGGGGGuuggcaCCAGGCGc -3'
miRNA:   3'- uCGGcUCGGGUUu-CUCCC------GGUCCGUc -5'
30937 3' -60.7 NC_006552.1 + 30644 0.67 0.372176
Target:  5'- cGuuGAGCCUugGAAGucGGCCacccAGGCGGu -3'
miRNA:   3'- uCggCUCGGG--UUUCucCCGG----UCCGUC- -5'
30937 3' -60.7 NC_006552.1 + 59377 0.67 0.38762
Target:  5'- cGCgCGAGCCaacgauccauGGAGGGCgcggcagcguCAGGCGGu -3'
miRNA:   3'- uCG-GCUCGGguu-------UCUCCCG----------GUCCGUC- -5'
30937 3' -60.7 NC_006552.1 + 13320 0.67 0.389362
Target:  5'- uGCCG-GUUCGGAcuGGGGCCGGGCu- -3'
miRNA:   3'- uCGGCuCGGGUUUc-UCCCGGUCCGuc -5'
30937 3' -60.7 NC_006552.1 + 45406 0.67 0.389362
Target:  5'- cGCCGAcgaauuccccGCCC----GGGGCCGGcGCAGc -3'
miRNA:   3'- uCGGCU----------CGGGuuucUCCCGGUC-CGUC- -5'
30937 3' -60.7 NC_006552.1 + 6618 0.7 0.241495
Target:  5'- cAGCCG-GCCCGAuacaucgagcGGAGccCCAGGCAGc -3'
miRNA:   3'- -UCGGCuCGGGUU----------UCUCccGGUCCGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.