miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30937 5' -58.5 NC_006552.1 + 36165 0.66 0.577761
Target:  5'- cAUCgGCGcuGGCCuCGCcaGCaUCGCCGGc -3'
miRNA:   3'- -UAGaCGCuuUCGG-GCG--UG-AGCGGCCu -5'
30937 5' -58.5 NC_006552.1 + 53514 0.66 0.577761
Target:  5'- -cCUgGUGGAGGCucaCCGCGCgaUGCCGGAc -3'
miRNA:   3'- uaGA-CGCUUUCG---GGCGUGa-GCGGCCU- -5'
30937 5' -58.5 NC_006552.1 + 12379 0.66 0.55655
Target:  5'- uUCUGCaacGGCCUGCGCgUCGgCGGu -3'
miRNA:   3'- uAGACGcuuUCGGGCGUG-AGCgGCCu -5'
30937 5' -58.5 NC_006552.1 + 56901 0.66 0.546028
Target:  5'- cGUCgGCGAGgaguGGUaCCGCGCccgCGCUGGAc -3'
miRNA:   3'- -UAGaCGCUU----UCG-GGCGUGa--GCGGCCU- -5'
30937 5' -58.5 NC_006552.1 + 36384 0.66 0.546028
Target:  5'- --aUGCGGAuuacUCCGCGuCUCGCCGGc -3'
miRNA:   3'- uagACGCUUuc--GGGCGU-GAGCGGCCu -5'
30937 5' -58.5 NC_006552.1 + 26779 0.66 0.544979
Target:  5'- -cCUgGCGcacaGAGGCCCGCAguugcgcCUUGCCGGc -3'
miRNA:   3'- uaGA-CGC----UUUCGGGCGU-------GAGCGGCCu -5'
30937 5' -58.5 NC_006552.1 + 48497 0.66 0.53557
Target:  5'- -aCUGCGAgccggccuGAGCCCGCGCgcccaGCauccugaaCGGAg -3'
miRNA:   3'- uaGACGCU--------UUCGGGCGUGag---CG--------GCCU- -5'
30937 5' -58.5 NC_006552.1 + 11582 0.66 0.534528
Target:  5'- -aCUGCGccggcccAGGGCCUGCACcaguUCGCCGc- -3'
miRNA:   3'- uaGACGC-------UUUCGGGCGUG----AGCGGCcu -5'
30937 5' -58.5 NC_006552.1 + 43995 0.67 0.525183
Target:  5'- uGUCgGCGAccaGGGCCagGCGaacCUCGCCGGu -3'
miRNA:   3'- -UAGaCGCU---UUCGGg-CGU---GAGCGGCCu -5'
30937 5' -58.5 NC_006552.1 + 51996 0.67 0.518988
Target:  5'- ---aGCGAGAGCuuGCcgcggcgcgccagcaACUCGCCGa- -3'
miRNA:   3'- uagaCGCUUUCGggCG---------------UGAGCGGCcu -5'
30937 5' -58.5 NC_006552.1 + 14135 0.67 0.514874
Target:  5'- cGUCaUGUGAGugcGCUCGCuCUCGcCCGGGa -3'
miRNA:   3'- -UAG-ACGCUUu--CGGGCGuGAGC-GGCCU- -5'
30937 5' -58.5 NC_006552.1 + 30471 0.7 0.316119
Target:  5'- -cCUGCGAucGCCUGUgaguagugcguACUCGCCGaGGu -3'
miRNA:   3'- uaGACGCUuuCGGGCG-----------UGAGCGGC-CU- -5'
30937 5' -58.5 NC_006552.1 + 56645 0.74 0.18578
Target:  5'- -gCUGCgGAAGGCCCGCAgCUaCGCCGaGGu -3'
miRNA:   3'- uaGACG-CUUUCGGGCGU-GA-GCGGC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.