miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30938 5' -55.8 NC_006552.1 + 43607 0.66 0.715057
Target:  5'- -cAUGUUGAUCAUGUCGCCGaucUGCUc -3'
miRNA:   3'- cuUAUAGCUGGUACGGCGGCc--GCGAu -5'
30938 5' -55.8 NC_006552.1 + 39273 0.66 0.704324
Target:  5'- aGGUGaCaGCCAgcGCUGCCGGCGCa- -3'
miRNA:   3'- cUUAUaGcUGGUa-CGGCGGCCGCGau -5'
30938 5' -55.8 NC_006552.1 + 44440 0.66 0.704324
Target:  5'- cGAGUAcgugcuguUCGAgCAgcaacugcGCUGCCGGCGCc- -3'
miRNA:   3'- -CUUAU--------AGCUgGUa-------CGGCGGCCGCGau -5'
30938 5' -55.8 NC_006552.1 + 7534 0.66 0.671745
Target:  5'- ---aGUCGGCCA-GCCGUaccgCGGCGUc- -3'
miRNA:   3'- cuuaUAGCUGGUaCGGCG----GCCGCGau -5'
30938 5' -55.8 NC_006552.1 + 53596 0.66 0.671745
Target:  5'- -----cCGGCCAguucggUGCCGCCGGCu--- -3'
miRNA:   3'- cuuauaGCUGGU------ACGGCGGCCGcgau -5'
30938 5' -55.8 NC_006552.1 + 11271 0.67 0.660797
Target:  5'- ---cGUCGGCCAauaugGCCcauGCCGGCGgaAg -3'
miRNA:   3'- cuuaUAGCUGGUa----CGG---CGGCCGCgaU- -5'
30938 5' -55.8 NC_006552.1 + 62932 0.67 0.638831
Target:  5'- --cUGUCGACUaccagaucaGUGCCGCUGacGCGCa- -3'
miRNA:   3'- cuuAUAGCUGG---------UACGGCGGC--CGCGau -5'
30938 5' -55.8 NC_006552.1 + 13687 0.67 0.638831
Target:  5'- -----gCGuCCAgUGCCGCCuGGCGCa- -3'
miRNA:   3'- cuuauaGCuGGU-ACGGCGG-CCGCGau -5'
30938 5' -55.8 NC_006552.1 + 52949 0.68 0.594903
Target:  5'- -----cCGGCgCccGCCGCCGGUGCg- -3'
miRNA:   3'- cuuauaGCUG-GuaCGGCGGCCGCGau -5'
30938 5' -55.8 NC_006552.1 + 52613 0.68 0.573091
Target:  5'- -----aCGGCC-UGCCGCCGGUcgGCg- -3'
miRNA:   3'- cuuauaGCUGGuACGGCGGCCG--CGau -5'
30938 5' -55.8 NC_006552.1 + 63826 0.68 0.573091
Target:  5'- ------aGGCCAgccaGCCGCCGGCGgaGg -3'
miRNA:   3'- cuuauagCUGGUa---CGGCGGCCGCgaU- -5'
30938 5' -55.8 NC_006552.1 + 63481 0.68 0.573091
Target:  5'- -----cCGcuGCCG-GCCGCCGGCGCc- -3'
miRNA:   3'- cuuauaGC--UGGUaCGGCGGCCGCGau -5'
30938 5' -55.8 NC_006552.1 + 19728 0.69 0.509052
Target:  5'- ---cGUCGGCCAcguUGgCGCUGGcCGCUGc -3'
miRNA:   3'- cuuaUAGCUGGU---ACgGCGGCC-GCGAU- -5'
30938 5' -55.8 NC_006552.1 + 12615 0.69 0.488357
Target:  5'- uGAUGUCG-CCG-GCCGuagucugcCCGGCGCUGg -3'
miRNA:   3'- cUUAUAGCuGGUaCGGC--------GGCCGCGAU- -5'
30938 5' -55.8 NC_006552.1 + 33608 0.71 0.400732
Target:  5'- ---cGUCGuCCAcGCCGUCGGCGUa- -3'
miRNA:   3'- cuuaUAGCuGGUaCGGCGGCCGCGau -5'
30938 5' -55.8 NC_006552.1 + 3574 0.75 0.221097
Target:  5'- aGGUGcUGGCCGaGCCGCCGGCGCc- -3'
miRNA:   3'- cUUAUaGCUGGUaCGGCGGCCGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.