Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30940 | 3' | -54.4 | NC_006552.1 | + | 44812 | 0.81 | 0.137121 |
Target: 5'- aUCGUCCGCcCUCCCGGCgAACGGCcuGCa -3' miRNA: 3'- cAGCAGGUGuGAGGGCUG-UUGCUG--CG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 29726 | 0.73 | 0.434437 |
Target: 5'- aUUGUCCGCACUaCCCGgGCAuCG-CGCg -3' miRNA: 3'- cAGCAGGUGUGA-GGGC-UGUuGCuGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 56834 | 0.73 | 0.453617 |
Target: 5'- gGUUGUCCGCAgCUUCCagggauucGGCAGCGcCGCg -3' miRNA: 3'- -CAGCAGGUGU-GAGGG--------CUGUUGCuGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 43539 | 0.72 | 0.473248 |
Target: 5'- cUCGUCuCGCGCggcgUCCCGAaCAGCuuucGACGCg -3' miRNA: 3'- cAGCAG-GUGUG----AGGGCU-GUUG----CUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 24266 | 0.72 | 0.483222 |
Target: 5'- gGUCGcCgGCACUaCCGGCAGCGGCa- -3' miRNA: 3'- -CAGCaGgUGUGAgGGCUGUUGCUGcg -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 25825 | 0.71 | 0.54499 |
Target: 5'- -aCGcCCGCAUgaacCUCGGCGAUGGCGCc -3' miRNA: 3'- caGCaGGUGUGa---GGGCUGUUGCUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 58486 | 0.7 | 0.586484 |
Target: 5'- uGUCGagCGCugugcuuCUCCCGGCAACacaucaaGGCGCa -3' miRNA: 3'- -CAGCagGUGu------GAGGGCUGUUG-------CUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 29296 | 0.7 | 0.587557 |
Target: 5'- ---aUUCGCGCcCCaCGGCGGCGGCGCa -3' miRNA: 3'- cagcAGGUGUGaGG-GCUGUUGCUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 12714 | 0.7 | 0.609088 |
Target: 5'- cGUCGUagcgaauaCGCugUUCCGGCGucaGGCGCa -3' miRNA: 3'- -CAGCAg-------GUGugAGGGCUGUug-CUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 44087 | 0.7 | 0.619886 |
Target: 5'- uUCGccgCCGCGCUCuuGGC--CGGCGCc -3' miRNA: 3'- cAGCa--GGUGUGAGggCUGuuGCUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 5257 | 0.7 | 0.630695 |
Target: 5'- gGUCGUCgCACGCcugccgguaguUgCCGGCGagcaagucGCGGCGCa -3' miRNA: 3'- -CAGCAG-GUGUG-----------AgGGCUGU--------UGCUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 25699 | 0.69 | 0.684565 |
Target: 5'- aGUCccaugCCGCACUCCUGcGCAGCGAUu- -3' miRNA: 3'- -CAGca---GGUGUGAGGGC-UGUUGCUGcg -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 11310 | 0.68 | 0.695235 |
Target: 5'- -aCGUCCAUGcCUCCCuggauguCGGCGGCGUc -3' miRNA: 3'- caGCAGGUGU-GAGGGcu-----GUUGCUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 35282 | 0.68 | 0.695235 |
Target: 5'- aUCGgggcucaugCCGCGCagggcgUCCGACAugGAUGCc -3' miRNA: 3'- cAGCa--------GGUGUGa-----GGGCUGUugCUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 20807 | 0.68 | 0.716386 |
Target: 5'- -gUGaUCC-CGCUCgcguCCGGCGGCGugGCg -3' miRNA: 3'- caGC-AGGuGUGAG----GGCUGUUGCugCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 7997 | 0.68 | 0.725805 |
Target: 5'- -aCGUCCACugUguacuugccgaagCgCGACAGCGGUGCa -3' miRNA: 3'- caGCAGGUGugA-------------GgGCUGUUGCUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 53297 | 0.68 | 0.726847 |
Target: 5'- -aCGgCCGCGCagCCCGcCGcGCGGCGCa -3' miRNA: 3'- caGCaGGUGUGa-GGGCuGU-UGCUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 33450 | 0.68 | 0.737217 |
Target: 5'- cUUGcCCGC-CUCCgCGACGGCaGCGCc -3' miRNA: 3'- cAGCaGGUGuGAGG-GCUGUUGcUGCG- -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 32319 | 0.68 | 0.751561 |
Target: 5'- cGUCGgCCugGCUCUCGugGaucagccugccgcgcACGGCGg -3' miRNA: 3'- -CAGCaGGugUGAGGGCugU---------------UGCUGCg -5' |
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30940 | 3' | -54.4 | NC_006552.1 | + | 57909 | 0.67 | 0.75764 |
Target: 5'- ---uUCCugAUUCCCGACcccaAACGcCGCg -3' miRNA: 3'- cagcAGGugUGAGGGCUG----UUGCuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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