miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30940 5' -55.1 NC_006552.1 + 45360 0.69 0.594668
Target:  5'- gGCAUGUCGgccgguaucUGGCAGCgcGGcCCGGGCu- -3'
miRNA:   3'- -CGUGCAGC---------AUCGUCG--UCaGGCUCGuc -5'
30940 5' -55.1 NC_006552.1 + 25381 0.68 0.627339
Target:  5'- cCGCGgCGaaguUAGCAGCGGUCCaguuAGCAGc -3'
miRNA:   3'- cGUGCaGC----AUCGUCGUCAGGc---UCGUC- -5'
30940 5' -55.1 NC_006552.1 + 30878 0.68 0.653514
Target:  5'- cGCACaccguaGUCGauagcccacugcugcUGGCAGCGGUC-GGGCGGa -3'
miRNA:   3'- -CGUG------CAGC---------------AUCGUCGUCAGgCUCGUC- -5'
30940 5' -55.1 NC_006552.1 + 58614 0.68 0.660045
Target:  5'- -gGCGUCgGUGGCcGCg--CCGGGCAGa -3'
miRNA:   3'- cgUGCAG-CAUCGuCGucaGGCUCGUC- -5'
30940 5' -55.1 NC_006552.1 + 18199 0.67 0.681739
Target:  5'- uCACGUUGUugGGCA--GGUCCGAGCc- -3'
miRNA:   3'- cGUGCAGCA--UCGUcgUCAGGCUCGuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.