miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30941 3' -57.3 NC_006552.1 + 15647 0.66 0.583828
Target:  5'- cGCUGCUCAUCCuGCugguccucGGCGaggaucGCAGCa- -3'
miRNA:   3'- aUGACGAGUAGG-CG--------CCGCa-----UGUCGgu -5'
30941 3' -57.3 NC_006552.1 + 43534 0.67 0.573028
Target:  5'- cACUcCUCGUCucgCGCGGCGUcccgaACAGCUu -3'
miRNA:   3'- aUGAcGAGUAG---GCGCCGCA-----UGUCGGu -5'
30941 3' -57.3 NC_006552.1 + 5690 0.67 0.573028
Target:  5'- cGCUcucgGCUgAUUCGCGGCGgucGCGGCgAa -3'
miRNA:   3'- aUGA----CGAgUAGGCGCCGCa--UGUCGgU- -5'
30941 3' -57.3 NC_006552.1 + 8411 0.67 0.551579
Target:  5'- aACUGCUCGgggcucaggCCGCgccaGGCGcGCAGCa- -3'
miRNA:   3'- aUGACGAGUa--------GGCG----CCGCaUGUCGgu -5'
30941 3' -57.3 NC_006552.1 + 12874 0.67 0.540944
Target:  5'- cUGCUGCgccucggCGaccUCgGCGGCGUGC-GCCu -3'
miRNA:   3'- -AUGACGa------GU---AGgCGCCGCAUGuCGGu -5'
30941 3' -57.3 NC_006552.1 + 13001 0.68 0.499166
Target:  5'- aGCUGCUCGggCCGUaGC-UGCGGCCc -3'
miRNA:   3'- aUGACGAGUa-GGCGcCGcAUGUCGGu -5'
30941 3' -57.3 NC_006552.1 + 9778 0.69 0.419464
Target:  5'- cGCUGCU-GUCCGUGGaucauuuCGUGCAGCa- -3'
miRNA:   3'- aUGACGAgUAGGCGCC-------GCAUGUCGgu -5'
30941 3' -57.3 NC_006552.1 + 41022 0.71 0.341399
Target:  5'- aGCaGUUCAUCCGCguuGGC-UGCGGCCGu -3'
miRNA:   3'- aUGaCGAGUAGGCG---CCGcAUGUCGGU- -5'
30941 3' -57.3 NC_006552.1 + 35899 0.72 0.300147
Target:  5'- cUGCUGcCUCAUcCCGCaGGCGUuguagcuugccugcGCGGCCu -3'
miRNA:   3'- -AUGAC-GAGUA-GGCG-CCGCA--------------UGUCGGu -5'
30941 3' -57.3 NC_006552.1 + 4771 0.73 0.259538
Target:  5'- gGCUGCgUCAcCUGCGGCGccaccacUACAGCCc -3'
miRNA:   3'- aUGACG-AGUaGGCGCCGC-------AUGUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.