Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30945 | 5' | -59.8 | NC_006554.1 | + | 3403 | 0.66 | 0.102598 |
Target: 5'- uCGGCgCGCCugCAuccUGuGACCaCGCUugCa -3' miRNA: 3'- -GCCG-GUGGugGU---GCuCUGG-GUGGugG- -5' |
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30945 | 5' | -59.8 | NC_006554.1 | + | 2055 | 0.66 | 0.099079 |
Target: 5'- uGGCCcCCGCCACGucuGGuuUgaaagcguacaugGCCGCCa -3' miRNA: 3'- gCCGGuGGUGGUGCu--CUggG-------------UGGUGG- -5' |
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30945 | 5' | -59.8 | NC_006554.1 | + | 4267 | 0.67 | 0.085562 |
Target: 5'- gGGCgACCGCCugaagACGGGuggcuacACCCuuaaaggcugcagugGCCACCa -3' miRNA: 3'- gCCGgUGGUGG-----UGCUC-------UGGG---------------UGGUGG- -5' |
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30945 | 5' | -59.8 | NC_006554.1 | + | 6911 | 0.68 | 0.067655 |
Target: 5'- -aGCCAUguCCACGAggGACCCGgCugCa -3' miRNA: 3'- gcCGGUGguGGUGCU--CUGGGUgGugG- -5' |
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30945 | 5' | -59.8 | NC_006554.1 | + | 2222 | 0.74 | 0.022194 |
Target: 5'- aCGGCCAUUAacCCAUGGGACgCAUCACUc -3' miRNA: 3'- -GCCGGUGGU--GGUGCUCUGgGUGGUGG- -5' |
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30945 | 5' | -59.8 | NC_006554.1 | + | 5970 | 1.11 | 0.000014 |
Target: 5'- aCGGCCACCACCACGAGACCCACCACCc -3' miRNA: 3'- -GCCGGUGGUGGUGCUCUGGGUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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