miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30950 5' -59.1 NC_006556.1 + 6539 0.67 0.247705
Target:  5'- aCCAccuuGGCggCCUCAUAGCCCCAguagucaaauauCGCCa- -3'
miRNA:   3'- -GGUu---CCG--GGGGUAUUGGGGU------------GCGGca -5'
30950 5' -59.1 NC_006556.1 + 2911 0.67 0.241092
Target:  5'- gCCAuGGCCaCCAUGuuuGCCUCA-GCCGUc -3'
miRNA:   3'- -GGUuCCGGgGGUAU---UGGGGUgCGGCA- -5'
30950 5' -59.1 NC_006556.1 + 5040 0.67 0.234627
Target:  5'- gCCAuaaGCCCCCA--GCCUaGCGUCGUa -3'
miRNA:   3'- -GGUuc-CGGGGGUauUGGGgUGCGGCA- -5'
30950 5' -59.1 NC_006556.1 + 20822 0.67 0.222134
Target:  5'- ---cGGCCCCUuuaAACauuuuaaCCACGCCGUu -3'
miRNA:   3'- gguuCCGGGGGua-UUGg------GGUGCGGCA- -5'
30950 5' -59.1 NC_006556.1 + 18251 0.68 0.204461
Target:  5'- uCCuAGGCCacagcaCCuguauUAGCCCCucuACGCCGg -3'
miRNA:   3'- -GGuUCCGGg-----GGu----AUUGGGG---UGCGGCa -5'
30950 5' -59.1 NC_006556.1 + 4269 0.68 0.193366
Target:  5'- gUAGGGCCgCCCuagGACCCUcuaccGCgGCCGUc -3'
miRNA:   3'- gGUUCCGG-GGGua-UUGGGG-----UG-CGGCA- -5'
30950 5' -59.1 NC_006556.1 + 16977 0.68 0.182802
Target:  5'- gCCGuAGGCCgCCAaAAUCCCGC-CCGa -3'
miRNA:   3'- -GGU-UCCGGgGGUaUUGGGGUGcGGCa -5'
30950 5' -59.1 NC_006556.1 + 11793 0.7 0.148469
Target:  5'- aCCaAAGcGCCCCCAacUAccGCCCCaacaacuaaagccaACGCCGa -3'
miRNA:   3'- -GG-UUC-CGGGGGU--AU--UGGGG--------------UGCGGCa -5'
30950 5' -59.1 NC_006556.1 + 6842 0.71 0.115277
Target:  5'- -aAGGGCCuCCCAaacaugaaUAGgCCCAUGCCGa -3'
miRNA:   3'- ggUUCCGG-GGGU--------AUUgGGGUGCGGCa -5'
30950 5' -59.1 NC_006556.1 + 4234 0.72 0.096565
Target:  5'- cCUAGGGCggcccuaCCCAaAGCCCuCAUGCCGUg -3'
miRNA:   3'- -GGUUCCGg------GGGUaUUGGG-GUGCGGCA- -5'
30950 5' -59.1 NC_006556.1 + 7290 0.74 0.06743
Target:  5'- cCCAAGGCCgCCAagacGACCCUauACGCCa- -3'
miRNA:   3'- -GGUUCCGGgGGUa---UUGGGG--UGCGGca -5'
30950 5' -59.1 NC_006556.1 + 118 1.08 0.000131
Target:  5'- cCCAAGGCCCCCAUAACCCCACGCCGUu -3'
miRNA:   3'- -GGUUCCGGGGGUAUUGGGGUGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.