miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30952 3' -55.3 NC_006556.1 + 4356 0.66 0.413135
Target:  5'- aGGCCAU---GGCCAUGGgGUCcCCc -3'
miRNA:   3'- gCCGGUGauaUCGGUGCUgCAGuGGa -5'
30952 3' -55.3 NC_006556.1 + 15598 0.66 0.454457
Target:  5'- aGGCCuagcGCUAUAgGCCACGAUugauacaaagGUC-CCa -3'
miRNA:   3'- gCCGG----UGAUAU-CGGUGCUG----------CAGuGGa -5'
30952 3' -55.3 NC_006556.1 + 4943 0.67 0.364879
Target:  5'- cCGG-CACUAUAuacGCCAUGGCGUaaagGCCg -3'
miRNA:   3'- -GCCgGUGAUAU---CGGUGCUGCAg---UGGa -5'
30952 3' -55.3 NC_006556.1 + 11109 0.67 0.393362
Target:  5'- uGGCCAC---AGCCGCGcCuaUCACCUu -3'
miRNA:   3'- gCCGGUGauaUCGGUGCuGc-AGUGGA- -5'
30952 3' -55.3 NC_006556.1 + 3556 0.69 0.296115
Target:  5'- -uGCCAUaAUGGUCACGACGgccuaCGCCa -3'
miRNA:   3'- gcCGGUGaUAUCGGUGCUGCa----GUGGa -5'
30952 3' -55.3 NC_006556.1 + 15365 0.71 0.206537
Target:  5'- aGGCCGCUAUGGCCAguaucgcuauuaUGGCcaaCGCCg -3'
miRNA:   3'- gCCGGUGAUAUCGGU------------GCUGca-GUGGa -5'
30952 3' -55.3 NC_006556.1 + 10911 0.73 0.137232
Target:  5'- uGGCgC-CUAUGGUCAUGACGUUGCCc -3'
miRNA:   3'- gCCG-GuGAUAUCGGUGCUGCAGUGGa -5'
30952 3' -55.3 NC_006556.1 + 5159 0.73 0.154503
Target:  5'- uGGCCAUUcacAGUCACGACaUCACCg -3'
miRNA:   3'- gCCGGUGAua-UCGGUGCUGcAGUGGa -5'
30952 3' -55.3 NC_006556.1 + 4530 1.08 0.000311
Target:  5'- uCGGCCACUAUAGCCACGACGUCACCUg -3'
miRNA:   3'- -GCCGGUGAUAUCGGUGCUGCAGUGGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.