miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30956 5' -56.8 NC_006556.1 + 19294 0.66 0.305288
Target:  5'- uGCCAugGCGAuUGCCaaCGCCAucauuaGCGCCAGa -3'
miRNA:   3'- -CGGU--CGUU-AUGGcgGCGGU------UGCGGUU- -5'
30956 5' -56.8 NC_006556.1 + 13593 0.67 0.266475
Target:  5'- -aCGGCAuuauguUGCCGUCGUaCAACGCCu- -3'
miRNA:   3'- cgGUCGUu-----AUGGCGGCG-GUUGCGGuu -5'
30956 5' -56.8 NC_006556.1 + 10594 0.67 0.266475
Target:  5'- aGCCGGCA--ACC-CCaGCCAaaGCGCCc- -3'
miRNA:   3'- -CGGUCGUuaUGGcGG-CGGU--UGCGGuu -5'
30956 5' -56.8 NC_006556.1 + 11584 0.68 0.247919
Target:  5'- gGCCAGCGAUACUaauGUCGUCAcgauaaagacuauggGgGCCAGu -3'
miRNA:   3'- -CGGUCGUUAUGG---CGGCGGU---------------UgCGGUU- -5'
30956 5' -56.8 NC_006556.1 + 4818 0.68 0.224643
Target:  5'- cCCAGCAcuaaaugcGUACCGauaaCGCCAACgacucaaGCCGAa -3'
miRNA:   3'- cGGUCGU--------UAUGGCg---GCGGUUG-------CGGUU- -5'
30956 5' -56.8 NC_006556.1 + 19871 0.68 0.218342
Target:  5'- uGCCGGCAcacauaaGUGCCGCgGCUgagGAUuugGCCAAa -3'
miRNA:   3'- -CGGUCGU-------UAUGGCGgCGG---UUG---CGGUU- -5'
30956 5' -56.8 NC_006556.1 + 7040 0.69 0.20092
Target:  5'- aGCCGGCAAUACggguaaUGCgGCCAGC-CUAGa -3'
miRNA:   3'- -CGGUCGUUAUG------GCGgCGGUUGcGGUU- -5'
30956 5' -56.8 NC_006556.1 + 15355 0.69 0.184181
Target:  5'- gGCCAGU---AUCGCUauuaugGCCAACGCCGc -3'
miRNA:   3'- -CGGUCGuuaUGGCGG------CGGUUGCGGUu -5'
30956 5' -56.8 NC_006556.1 + 11786 0.72 0.121433
Target:  5'- cGCCccCAAcUACCGCCccaacaacuaaaGCCAACGCCGAa -3'
miRNA:   3'- -CGGucGUU-AUGGCGG------------CGGUUGCGGUU- -5'
30956 5' -56.8 NC_006556.1 + 11189 0.83 0.017858
Target:  5'- uGCCAGCAAUAUCGCCucagcccacaugGCgGACGCCAAu -3'
miRNA:   3'- -CGGUCGUUAUGGCGG------------CGgUUGCGGUU- -5'
30956 5' -56.8 NC_006556.1 + 7787 1.08 0.000161
Target:  5'- cGCCAGCAAUACCGCCGCCAACGCCAAa -3'
miRNA:   3'- -CGGUCGUUAUGGCGGCGGUUGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.