miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30958 5' -48.9 NC_006556.1 + 7109 0.72 0.39693
Target:  5'- ---aUGCCgu-AUACAACGCCAugGUg -3'
miRNA:   3'- uuucACGGaucUAUGUUGCGGUugCG- -5'
30958 5' -48.9 NC_006556.1 + 14621 0.7 0.520865
Target:  5'- gAGAGUGCCggugUAGAUACGgguGgGCCAGC-Cg -3'
miRNA:   3'- -UUUCACGG----AUCUAUGU---UgCGGUUGcG- -5'
30958 5' -48.9 NC_006556.1 + 13604 0.7 0.545101
Target:  5'- ---uUGCCgucGUACAACGCCuauACGCc -3'
miRNA:   3'- uuucACGGaucUAUGUUGCGGu--UGCG- -5'
30958 5' -48.9 NC_006556.1 + 13464 0.66 0.743064
Target:  5'- ---aUGCCUcaAGcgGCAACGCCAcgauaacccuauAUGCu -3'
miRNA:   3'- uuucACGGA--UCuaUGUUGCGGU------------UGCG- -5'
30958 5' -48.9 NC_006556.1 + 10707 1.1 0.001022
Target:  5'- cAAAGUGCCUAGAUACAACGCCAACGCc -3'
miRNA:   3'- -UUUCACGGAUCUAUGUUGCGGUUGCG- -5'
30958 5' -48.9 NC_006556.1 + 11232 0.68 0.669646
Target:  5'- ---aUGCCUAGG----ACGCCAaaACGCg -3'
miRNA:   3'- uuucACGGAUCUauguUGCGGU--UGCG- -5'
30958 5' -48.9 NC_006556.1 + 11288 0.67 0.694476
Target:  5'- ----cGCCUAGGUACAuaGUCAuaGCGCc -3'
miRNA:   3'- uuucaCGGAUCUAUGUugCGGU--UGCG- -5'
30958 5' -48.9 NC_006556.1 + 2417 0.67 0.706782
Target:  5'- ----aGCCUAGccGCcGCGUCAACGUc -3'
miRNA:   3'- uuucaCGGAUCuaUGuUGCGGUUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.