miRNA: 3'- -GGGAGACCCUguaCGgAU--UCCGGcac -5'
miRNA: 3'- gGGAGACCCUGuaCGgA---UUCCGGcac -5'
miRNA: 3'- -GGGAGACCCUGUACGGAUUCCGGCAC- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30959 | 3' | -56.8 | NC_006556.1 | + | 6948 | 0.69 | 0.214553 |
|
Target: 5'- gCCCUCUGGGAaacGCgUGguGGGCCa-- -3' miRNA: 3'- -GGGAGACCCUguaCGgAU--UCCGGcac -5' |
|||||||
| 30959 | 3' | -56.8 | NC_006556.1 | + | 18801 | 0.7 | 0.202768 |
|
Target: 5'- aCCUCUGGGACggGCgUaguGAGGUCa-- -3' miRNA: 3'- gGGAGACCCUGuaCGgA---UUCCGGcac -5' |
|||||||
| 30959 | 3' | -56.8 | NC_006556.1 | + | 11668 | 1.11 | 0.000132 |
|
Target: 5'- cCCCUCUGGGACAUGCCUAAGGCCGUGg -3' miRNA: 3'- -GGGAGACCCUGUACGGAUUCCGGCAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home