miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30960 5' -51.6 NC_006556.1 + 13151 1.1 0.000539
Target:  5'- uGUGCCGGCAGUCAUGUUGACCAAAGGc -3'
miRNA:   3'- -CACGGCCGUCAGUACAACUGGUUUCC- -5'
30960 5' -51.6 NC_006556.1 + 6127 0.67 0.565918
Target:  5'- -gGCC-GCAGUUGUGUUGAC--GGGGu -3'
miRNA:   3'- caCGGcCGUCAGUACAACUGguUUCC- -5'
30960 5' -51.6 NC_006556.1 + 2451 0.67 0.590006
Target:  5'- aUGCCcuauugggucaaGGC-GUCG-GUUGACCAuAGGa -3'
miRNA:   3'- cACGG------------CCGuCAGUaCAACUGGUuUCC- -5'
30960 5' -51.6 NC_006556.1 + 10959 0.66 0.602119
Target:  5'- -aGUCGGCAacGUCA---UGACCAuAGGc -3'
miRNA:   3'- caCGGCCGU--CAGUacaACUGGUuUCC- -5'
30960 5' -51.6 NC_006556.1 + 14624 0.66 0.61305
Target:  5'- aGUGCCGGUguagauacgggugGGcCAgccgGUUGACCAAc-- -3'
miRNA:   3'- -CACGGCCG-------------UCaGUa---CAACUGGUUucc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.