miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30962 3' -52.6 NC_006556.1 + 10686 0.66 0.569928
Target:  5'- uGGCCAuuUGGCUGUcGGauaauaGCGCGgCGGc -3'
miRNA:   3'- -UCGGUuuAUCGGCAaUC------UGCGCgGUC- -5'
30962 3' -52.6 NC_006556.1 + 10202 0.66 0.557972
Target:  5'- cGCCAGAacGCCG-UAGACcaccaaaGCCAGa -3'
miRNA:   3'- uCGGUUUauCGGCaAUCUGcg-----CGGUC- -5'
30962 3' -52.6 NC_006556.1 + 10980 0.66 0.534286
Target:  5'- cAGCCA---AGCCGUcaagggugaccUAGAgGCGCUugAGg -3'
miRNA:   3'- -UCGGUuuaUCGGCA-----------AUCUgCGCGG--UC- -5'
30962 3' -52.6 NC_006556.1 + 6496 0.67 0.488079
Target:  5'- gGGCUAugaGGCCGccaaggUGGugGCGCCc- -3'
miRNA:   3'- -UCGGUuuaUCGGCa-----AUCugCGCGGuc -5'
30962 3' -52.6 NC_006556.1 + 10719 0.67 0.476818
Target:  5'- cAGCCAAAUGGCCaaaGUgccUAGAUacaaCGCCAa -3'
miRNA:   3'- -UCGGUUUAUCGG---CA---AUCUGc---GCGGUc -5'
30962 3' -52.6 NC_006556.1 + 8043 0.68 0.454692
Target:  5'- uGGCCAGAUauGGCCGaaauGGCGaauugGCCGGu -3'
miRNA:   3'- -UCGGUUUA--UCGGCaau-CUGCg----CGGUC- -5'
30962 3' -52.6 NC_006556.1 + 6629 0.68 0.433134
Target:  5'- aAGCCGAAauUGGCCGguccuuGGCaCGCCAc -3'
miRNA:   3'- -UCGGUUU--AUCGGCaau---CUGcGCGGUc -5'
30962 3' -52.6 NC_006556.1 + 11156 0.69 0.37222
Target:  5'- cGCC-AAUAGCCGcuucUUGGACagcacgccuaGCGCCAa -3'
miRNA:   3'- uCGGuUUAUCGGC----AAUCUG----------CGCGGUc -5'
30962 3' -52.6 NC_006556.1 + 13235 0.71 0.292361
Target:  5'- uAGCCAAcgGGCCGgUGGACauaGCCGu -3'
miRNA:   3'- -UCGGUUuaUCGGCaAUCUGcg-CGGUc -5'
30962 3' -52.6 NC_006556.1 + 14947 0.73 0.220051
Target:  5'- cGCUAGGUaucuGGCCuaUAGAgGCGCCAGg -3'
miRNA:   3'- uCGGUUUA----UCGGcaAUCUgCGCGGUC- -5'
30962 3' -52.6 NC_006556.1 + 16987 0.76 0.124244
Target:  5'- uGGCCAcAUAGCCG-UAGGC-CGCCAa -3'
miRNA:   3'- -UCGGUuUAUCGGCaAUCUGcGCGGUc -5'
30962 3' -52.6 NC_006556.1 + 17782 0.77 0.109743
Target:  5'- cGGCCAAGUcuuuaGGCCGUauaugcUGGGCGCGCUg- -3'
miRNA:   3'- -UCGGUUUA-----UCGGCA------AUCUGCGCGGuc -5'
30962 3' -52.6 NC_006556.1 + 17234 1.1 0.000409
Target:  5'- cAGCCAAAUAGCCGUUAGACGCGCCAGa -3'
miRNA:   3'- -UCGGUUUAUCGGCAAUCUGCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.