miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30962 5' -55.6 NC_006556.1 + 7502 0.66 0.395451
Target:  5'- uACCG-GCUauguaaagggUCCUGCGGUGauagCUGGCGg -3'
miRNA:   3'- uUGGCgCGA----------AGGGUGCUAUa---GACCGC- -5'
30962 5' -55.6 NC_006556.1 + 14920 0.72 0.150294
Target:  5'- uGGCCGUGCcaagcugauaucccgUCCCGCuaGGUAUCUGGCc -3'
miRNA:   3'- -UUGGCGCGa--------------AGGGUG--CUAUAGACCGc -5'
30962 5' -55.6 NC_006556.1 + 17164 0.68 0.305288
Target:  5'- gAAgCGCGgUUCCCuauACGGccUCUGGCGc -3'
miRNA:   3'- -UUgGCGCgAAGGG---UGCUauAGACCGC- -5'
30962 5' -55.6 NC_006556.1 + 17195 1.06 0.000385
Target:  5'- gAACCGCGCUUCCCACGAUAUCUGGCGc -3'
miRNA:   3'- -UUGGCGCGAAGGGUGCUAUAGACCGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.