miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30969 3' -48.9 NC_006556.1 + 17138 1.12 0.000941
Target:  5'- uCAAUUCUACGCGCCAGAUAUCGUGGGa -3'
miRNA:   3'- -GUUAAGAUGCGCGGUCUAUAGCACCC- -5'
30969 3' -48.9 NC_006556.1 + 18141 0.72 0.458937
Target:  5'- ---gUCUGCGUGcCCAGAgagGUCGUugaGGGc -3'
miRNA:   3'- guuaAGAUGCGC-GGUCUa--UAGCA---CCC- -5'
30969 3' -48.9 NC_006556.1 + 1134 0.66 0.801742
Target:  5'- ---gUCUAUGCGCCaaAGGUGUUGaGGc -3'
miRNA:   3'- guuaAGAUGCGCGG--UCUAUAGCaCCc -5'
30969 3' -48.9 NC_006556.1 + 17024 0.71 0.516097
Target:  5'- ---aUCaugACGcCGCUGGGUAUUGUGGGu -3'
miRNA:   3'- guuaAGa--UGC-GCGGUCUAUAGCACCC- -5'
30969 3' -48.9 NC_006556.1 + 15843 0.66 0.801742
Target:  5'- ------cAUGUGCCGGGacuauUCGUGGGg -3'
miRNA:   3'- guuaagaUGCGCGGUCUau---AGCACCC- -5'
30969 3' -48.9 NC_006556.1 + 5809 0.66 0.822713
Target:  5'- ---aUCUGCGaaaagcauaGCCGGcAUAUCuUGGGg -3'
miRNA:   3'- guuaAGAUGCg--------CGGUC-UAUAGcACCC- -5'
30969 3' -48.9 NC_006556.1 + 17217 0.66 0.832831
Target:  5'- ------gACGCGCCAGAggcCGUauaGGGa -3'
miRNA:   3'- guuaagaUGCGCGGUCUauaGCA---CCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.